Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA repair

Term: GO:0006281  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene17147 SustainPine v3.0 1757
• AutoFact: Flap endonuclease 1 n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=FEN1_OSTLU 0.0
• FL-Next: sp=Flap endonuclease 1; Glycine max (Soybean) (Glycine hispida). 0.0
Complete
sp_v3.0_unigene17618 SustainPine v3.0 1328
• AutoFact: replication protein A 30kDa [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative replication factor A 1.122e-08
Complete
sp_v3.0_unigene18642 SustainPine v3.0 693
• AutoFact: putative transcription factor [Arabidopsis thaliana] 0.0
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
C-terminus
sp_v3.0_unigene18806 SustainPine v3.0 673
• AutoFact: RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb|CAA66480.1| transcription factor [Vicia faba var. minor] 1.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Recombination signal sequence recognition protein 1 4.994e-17
Internal
sp_v3.0_unigene18876 SustainPine v3.0 1538
• AutoFact: DNA ligase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TSX4_VITVI 0.0
• FL-Next: Isoform 3 of DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 0.0
• Sma3: DNA ligase 1.20512e-43
C-terminus
sp_v3.0_unigene19091 SustainPine v3.0 517
• AutoFact: ataxia-telangiectasia mutated protein (Atm) [Arabidopsis thaliana] 0.0
• FL-Next: sp=Serine/threonine-protein kinase ATM; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene19645 SustainPine v3.0 725
• AutoFact: Pentatricopeptide repeat-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L3A6_ARALL 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative pentatricopeptide (PPR) repeat-containing protein 2.367e-11
Internal
sp_v3.0_unigene19747 SustainPine v3.0 902
• AutoFact: DNA polymerase kappa subunit n=3 Tax=Arabidopsis thaliana RepID=Q6JDV7_ARATH 0.0
• FL-Next: Isoform 2 of DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 0.0
• Sma3: Putative DNA-directed polymerase, having alternative splicing products 2.032e-09
Internal
sp_v3.0_unigene20663 SustainPine v3.0 1125
• AutoFact: Myb n=1 Tax=Nicotiana tabacum RepID=Q948S5_TOBAC 0.0
• FL-Next: tr=R2R3-MYB transcription factor MYB9; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: MYB transcription factor 7.299e-22
N-terminus
sp_v3.0_unigene20820 SustainPine v3.0 370
• AutoFact: Caldesmon multi-domain protein 6.0e-12
• Sma3: Auxilin, putative 6.68e-13
coding
sp_v3.0_unigene21790 SustainPine v3.0 716
• AutoFact: FACT complex subunit SPT16 n=4 Tax=Oryza sativa RepID=SPT16_ORYSJ 7.0e-28
• FL-Next: sp=FACT complex subunit SPT16; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Facilitates chromatin transcription complex subunit SPT16 2.911e-13
N-terminus
sp_v3.0_unigene21919 SustainPine v3.0 298
• AutoFact: endonuclease 2 [Arabidopsis thaliana] gb|AEE86607.1| endonuclease 2 [Arabidopsis thaliana] 1.0e-06
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene22290 SustainPine v3.0 668
• AutoFact: geminivirus Rep-interacting motor protein [Arabidopsis thaliana] gb|AED91547.1| geminivirus Rep-interacting motor protein [Arabidopsis thaliana] 0.0
• FL-Next: Isoform 2 of Geminivirus Rep-interacting motor protein OS=Arabidopsis thaliana GN=GRIMP 0.0
Internal
sp_v3.0_unigene23207 SustainPine v3.0 3890
• AutoFact: PREDICTED: similar to ACA1 (autoinhibited Ca2+ -ATPase 1); calmodulin binding isoform 1 n=1 Tax=Vitis vinifera RepID=UPI00015C9686 0.0
• FL-Next: sp=Calcium-transporting ATPase 1, plasma membrane-type; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Autoinhibited calcium ATPase 4.23e-40
Complete
sp_v3.0_unigene23609 SustainPine v3.0 2252
• AutoFact: [L] COG0708 Exonuclease III 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Apurinic endonuclease-redox protein 2.853e-08
Complete
sp_v3.0_unigene24059 SustainPine v3.0 1174
• AutoFact: putative holliday junction resolvase [Arabidopsis thaliana] gb|AEE28856.1| putative holliday junction resolvase [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene24270 SustainPine v3.0 1740
• AutoFact: exodeoxyribonuclease III [Bdellovibrio bacteriovorus HD100] emb|CAE78316.1| Exodeoxyribonuclease III [Bdellovibrio bacteriovorus HD100] 3.0e-25
• FL-Next: sp=Apurinic endonuclease-redox protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene24521 SustainPine v3.0 524
• AutoFact: PREDICTED: similar to DNA repair protein RAD51 homolog A n=1 Tax=Hydra magnipapillata RepID=UPI0001923F2B 0.0
• FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
• Sma3: Meiotic recombination protein DMC1 homolog 6.709e-12
Internal
sp_v3.0_unigene27274 SustainPine v3.0 3224
• AutoFact: O-linked n-acetylglucosamine transferase, ogt, putative n=1 Tax=Ricinus communis RepID=B9RLG2_RICCO 0.0
• FL-Next: tr=O-linked n-acetylglucosamine transferase, ogt, putative; Ricinus communis (Castor bean). 0.0
• Sma3: TPR Domain containing protein, expressed 1.052e-08
Complete
sp_v3.0_unigene27521 SustainPine v3.0 679
• AutoFact: [L] COG1515 Deoxyinosine 3'endonuclease (endonuclease V) 6.0e-06
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain