Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA repair

Term: GO:0006281  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene6273 SustainPine v3.0 2140
AutoFact: putative RNA helicase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene6275 SustainPine v3.0 1825
AutoFact: putative growth-regulating factor 6 [Zea mays] gb|ABQ01219.1| putative growth-regulating factor 6 [Zea mays] 1.4013e-45
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Growth-regulating factor 6.044e-23
Complete
sp_v3.0_unigene6684 SustainPine v3.0 1939
AutoFact: Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9RQR6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Calmodulin binding protein 1.378e-18
C-terminus
sp_v3.0_unigene6764 SustainPine v3.0 1766
AutoFact: cysteine proteinase-like protein [Arabidopsis thaliana] gb|AAF14829.1|AC011664_11 unknown protein [Arabidopsis thaliana] gb|AAS76700.1| At3g02070 [Arabidopsis thaliana] gb|AAS92324.1| At3g02070 [Arabidopsis thaliana] dbj|BAH20151.1| AT3G02070 [Arabidopsis 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cysteine-type peptidase, putative 3.802e-15
Complete
sp_v3.0_unigene7328 SustainPine v3.0 737
AutoFact: HhH-GPD family protein [Anaeromyxobacter sp. Fw109-5] gb|ABS24995.1| HhH-GPD family protein [Anaeromyxobacter sp. Fw109-5] 2.0e-10
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Sma3: Os07g0657600 protein 8.772e-06
N-terminus
sp_v3.0_unigene7498 SustainPine v3.0 1626
AutoFact: transcription initiation factor TFIIH subunit H2 [Arabidopsis thaliana] gb|AAM90909.1|AF499443_1 p44/SSL1-like protein [Arabidopsis thaliana] gb|AAC97995.1| Similar to gb|Z30094 basic transcripion factor 2, 44 kD subunit from Homo sapiens. EST gb|W43325 c 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative Complete
sp_v3.0_unigene7566 SustainPine v3.0 3108
AutoFact: putative prolyl endopeptidase [Arabidopsis thaliana] 0.0
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Putative prolyl endopeptidase 9.548e-09
Complete
sp_v3.0_unigene7849 SustainPine v3.0 2132
AutoFact: A/G-specific adenine glycosylase [Arabidopsis thaliana] gb|AEE83174.1| A/G-specific adenine glycosylase [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Putative Complete
sp_v3.0_unigene7917 SustainPine v3.0 1307
AutoFact: HhH-GPD family protein [Anaeromyxobacter sp. Fw109-5] gb|ABS24995.1| HhH-GPD family protein [Anaeromyxobacter sp. Fw109-5] 4.0e-08
FL-Next: tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
C-terminus
sp_v3.0_unigene8045 SustainPine v3.0 1694
AutoFact: Excision repair cross-complementing 1 ercc1, putative n=1 Tax=Ricinus communis RepID=B9RF25_RICCO 0.0
FL-Next: sp=DNA excision repair protein ERCC-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene8157 SustainPine v3.0 1225
AutoFact: Protein kinase APK1B, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9SPN3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Receptor serine-threonine protein kinase, putative 4.835e-15
N-terminus
sp_v3.0_unigene8449 SustainPine v3.0 1878
AutoFact: GRF domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZIZ8_MALDO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Transcription activator 2.435e-07
C-terminus
sp_v3.0_unigene8568 SustainPine v3.0 549
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene8644 SustainPine v3.0 921
AutoFact: Cation-transporting atpase plant, putative n=1 Tax=Ricinus communis RepID=B9SH00_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Autoinhibited calcium ATPase 1.214e-22
Internal
sp_v3.0_unigene8984 SustainPine v3.0 636
AutoFact: DNA glycosylase (Fragment) n=1 Tax=Populus trichocarpa RepID=B9MTP0_POPTR 0.0
FL-Next: Isoform 2 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
Sma3: Repressor of silencing 1 1.385e-08
C-terminus
sp_v3.0_unigene8999 SustainPine v3.0 694
AutoFact: COP1 homolog [Solanum lycopersicum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: COP1 9.329e-11
Putative C-terminus
sp_v3.0_unigene9022 SustainPine v3.0 2243
AutoFact: N-acetyltransferase [Arabidopsis thaliana] gb|ABU62813.1| cohesion establishment factor 7 [Arabidopsis thaliana] gb|AEE85905.1| N-acetyltransferase [Arabidopsis thaliana] 0.0
FL-Next: tr=cDNA, clone: J065201C14, full insert sequence; Oryza sativa subsp. japonica (Rice). 0.0
Complete
sp_v3.0_unigene9103 SustainPine v3.0 1464
AutoFact: auxilin-like protein [Arabidopsis thaliana] gb|AAP81797.1| At4g12780 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Auxilin-like protein 1.37e-23
Complete
sp_v3.0_unigene9216 SustainPine v3.0 1633
AutoFact: cysteine proteinase-like protein [Arabidopsis thaliana] gb|AAF14829.1|AC011664_11 unknown protein [Arabidopsis thaliana] gb|AAS76700.1| At3g02070 [Arabidopsis thaliana] gb|AAS92324.1| At3g02070 [Arabidopsis thaliana] dbj|BAH20151.1| AT3G02070 [Arabidopsis 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cysteine-type peptidase, putative 3.589e-15
Complete
sp_v3.0_unigene9315 SustainPine v3.0 1723
AutoFact: Glucose-inhibited division family A protein n=2 Tax=Arabidopsis RepID=Q9SHS2_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Glucose inhibited division protein A, putative 2.121e-09
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain