Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA repair

Term: GO:0006281  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene186511 SustainPine v3.0 311
AutoFact: ADP,ATP carrier protein, mitochondrial n=9 Tax=Poaceae RepID=ADT_ORYSJ 1.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Adenine nucleotide translocator 8.847e-24
Internal
sp_v3.0_unigene187255 SustainPine v3.0 488
AutoFact: Glucose inhibited division protein A, putative n=1 Tax=Ricinus communis RepID=B9RRF2_RICCO 1.0e-20
FL-Next: tr=Glucose inhibited division protein A, putative; Ricinus communis (Castor bean). 0.0
N-terminus
sp_v3.0_unigene189799 SustainPine v3.0 254
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene191695 SustainPine v3.0 324
AutoFact: APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus (Silurana) tropicalis] gb|AAH64266.1| hypothetical protein MGC76280 [Xenopus (Silurana) tropicalis] gb|AAH80950.1| hypothetical protein MGC76280 [Xenopus (Silurana) tropicalis] emb|CAJ83004.1| A 8.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Apurinic endonuclease-redox protein 2.853e-08
Internal
sp_v3.0_unigene192650 SustainPine v3.0 389
AutoFact: ataxia-telangiectasia mutated protein (Atm) [Arabidopsis thaliana] 2.0e-25
FL-Next: sp=Serine/threonine-protein kinase ATM; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene192883 SustainPine v3.0 341
AutoFact: Cullin-3 n=1 Tax=Dictyostelium discoideum RepID=CUL3_DICDI 3.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cullin 1.233e-10
C-terminus
sp_v3.0_unigene195299 SustainPine v3.0 211
AutoFact: endonuclease 2 [Arabidopsis thaliana] gb|AAL32628.1| putative protein [Arabidopsis thaliana] gb|AAM13328.1| putative protein [Arabidopsis thaliana] gb|AEE86606.1| endonuclease 2 [Arabidopsis thaliana] 3.0e-23
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative C-terminus
sp_v3.0_unigene196426 SustainPine v3.0 336
AutoFact: FACT complex subunit SPT16 n=4 Tax=Oryza sativa RepID=SPT16_ORYSJ 3.0e-27
FL-Next: sp=FACT complex subunit SPT16; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Facilitates chromatin transcription complex subunit SPT16 2.662e-13
Internal
sp_v3.0_unigene198753 SustainPine v3.0 114
AutoFact: (6-4)DNA photolyase n=2 Tax=Oryza sativa RepID=UVR3_ORYSJ 3.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene198848 SustainPine v3.0 415
AutoFact: Flap endonuclease 1-A n=1 Tax=Physcomitrella patens subsp. patens RepID=FEN11_PHYPA 2.00386e-43
FL-Next: sp=Flap endonuclease 1-A; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene200256 SustainPine v3.0 466
AutoFact: Oxoglutarate dehydrogenase n=1 Tax=Polysphondylium pallidum RepID=D3BJ15_POLPA 0.0
FL-Next: tr=Putative uncharacterized protein ALNC14_047460; Albugo laibachii Nc14. 0.0
Sma3: 2-oxoglutarate dehydrogenase, putative 7.399e-09
Putative C-terminus
sp_v3.0_unigene203553 SustainPine v3.0 494
AutoFact: Cullin 1A n=2 Tax=Nicotiana tabacum RepID=Q711G8_TOBAC 4.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative cullin protein 6.866e-12
C-terminus
sp_v3.0_unigene207764 SustainPine v3.0 592
AutoFact: similar to FLAP endonuclease-1 (SW:P39748) [Arabidopsis thaliana] 2.0e-21
FL-Next: sp=Flap endonuclease 1-B; Physcomitrella patens subsp. patens (Moss). 0.0
Sma3: Flap endonuclease 1a 4.233e-09
Internal
sp_v3.0_unigene208106 SustainPine v3.0 166
AutoFact: Unassigned protein 6.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene208540 SustainPine v3.0 852
AutoFact: IQ-domain 6 protein [Arabidopsis thaliana] gb|AAC14531.1| putative SF16 protein {Helianthus annuus} [Arabidopsis thaliana] gb|ABM06004.1| At2g26180 [Arabidopsis thaliana] gb|AEC07805.1| IQ-domain 6 protein [Arabidopsis thaliana] 7.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Calmodulin binding protein 2.259e-26
Putative N-terminus
sp_v3.0_unigene208586 SustainPine v3.0 541
AutoFact: cullin 3B [Arabidopsis thaliana] sp|Q9C9L0.1|CUL3B_ARATH RecName: Full=Cullin-3B; Short=AtCUL3b gb|AAG52544.1|AC013289_11 putative cullin; 66460-68733 [Arabidopsis thaliana] gb|AEE34961.1| cullin 3B [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative cullin protein 3.22e-12
Internal
sp_v3.0_unigene208683 SustainPine v3.0 407
AutoFact: transcriptional activator DEMETER [Arabidopsis thaliana] sp|Q8LK56.2|DME_ARATH RecName: Full=Transcriptional activator DEMETER; AltName: Full=DNA glycosylase-related protein DME gb|ABC61677.1| DNA glycosylase DEMETER [Arabidopsis thaliana] gb|AED90761.1| 5.60519e-45
FL-Next: Isoform 2 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
Sma3: Repressor of silencing 1 1.514e-08
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain