Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: HTH domain AraC-type, conserved site

Term: IPR018062  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene150675 SustainPine v3.0 224
AutoFact: Ras-related protein Rab-5C n=1 Tax=Caligus clemensi RepID=C1C0G6_9MAXI 2.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Rab5/RabF-family small GTPase 1.951e-08
Internal
sp_v3.0_unigene150867 SustainPine v3.0 323
AutoFact: Very similar to receptor-like serine/threonine kinase [Arabidopsis thaliana] 8.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative Receptor-like serine/threonine kinase(RFK1) 1.327e-12
Internal
sp_v3.0_unigene151489 SustainPine v3.0 298
AutoFact: Rab GTPase n=2 Tax=Dictyosteliida RepID=D3BBG2_POLPA 2.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Rab5/RabF-family small GTPase 5.136e-08
C-terminus
sp_v3.0_unigene152888 SustainPine v3.0 391
AutoFact: egg permeability glycoprotein [Strongylocentrotus purpuratus] gb|AAW28777.1| egg permeability glycoprotein [Strongylocentrotus purpuratus] 6.02558e-44
FL-Next: tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew). 0.0
Sma3: Multidrug/pheromone exporter, MDR family, ABC transporter family 0.0
Internal
sp_v3.0_unigene153528 SustainPine v3.0 499
AutoFact: DEAD-box ATP-dependent RNA helicase 49 [Arabidopsis thaliana] sp|Q8GXD6.2|RH49_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 49 gb|AAG51820.1|AC016163_9 putative ATP-dependent RNA helicase; 76692-78838 [Arabidopsis thaliana] gb|AEE35194.1| DEAD- 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 18 8.71e-09
Internal
sp_v3.0_unigene154163 SustainPine v3.0 295
AutoFact: P-glycoprotein A [Caenorhabditis elegans] 2.0e-25
FL-Next: tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew). 0.0
Sma3: Multidrug/pheromone exporter, MDR family, ABC transporter family 0.0
C-terminus
sp_v3.0_unigene154728 SustainPine v3.0 357
AutoFact: PREDICTED: similar to RAB22A, member RAS oncogene family [Strongylocentrotus purpuratus] ref|XP_001176279.1| PREDICTED: similar to RAB22A, member RAS oncogene family [Strongylocentrotus purpuratus] 2.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ras-related protein Rab11A 4.977e-15
N-terminus
sp_v3.0_unigene156078 SustainPine v3.0 313
AutoFact: Alanyl-tRNA synthetase, putative n=1 Tax=Ricinus communis RepID=B9SYR5_RICCO 5.99756e-43
FL-Next: Isoform Cytoplasmic of Alanine--tRNA ligase OS=Arabidopsis thaliana GN=ALATS 0.0
Sma3: Alanine-trna ligase 1.103e-08
Internal
sp_v3.0_unigene156338 SustainPine v3.0 444
AutoFact: PREDICTED: ras-related protein Rab-5C-like n=1 Tax=Acyrthosiphon pisum RepID=UPI0001791863 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small GTP-binding protein 2.057e-11
N-terminus
sp_v3.0_unigene156529 SustainPine v3.0 492
AutoFact: ABC transporter B family protein n=1 Tax=Polysphondylium pallidum RepID=D3B9D6_POLPA 8.0e-40
FL-Next: tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew). 0.0
Sma3: Multidrug/pheromone exporter, MDR family, ABC transporter family 0.0
Internal
sp_v3.0_unigene156665 SustainPine v3.0 122
AutoFact: GTP-binding protein ypt5 [Aspergillus terreus NIH2624] gb|EAU34469.1| GTP-binding protein ypt5 [Aspergillus terreus NIH2624] 5.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Rab5/RabF-family small GTPase 2.812e-11
Internal
sp_v3.0_unigene157767 SustainPine v3.0 392
AutoFact: Ras-related protein Rab-5A n=7 Tax=Eutheria RepID=RAB5A_PIG 3.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ras-related protein Rab11A 1.03e-11
N-terminus
sp_v3.0_unigene158914 SustainPine v3.0 542
AutoFact: Rab-type small G protein n=1 Tax=Thalassiosira pseudonana RepID=B8BRY5_THAPS 4.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small GTP-binding protein 3.749e-08
C-terminus
sp_v3.0_unigene159923 SustainPine v3.0 335
AutoFact: Germin-like protein subfamily 2 member 1 n=2 Tax=Arabidopsis RepID=F4I108_ARATH 3.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Germin-like protein 4.442e-40
Putative C-terminus
sp_v3.0_unigene159945 SustainPine v3.0 285
AutoFact: ATP-binding cassette transporter, subfamily B, member 16, group MDR/PGP protein PpABCB16 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TKP2_PHYPA 9.0e-34
FL-Next: tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew). 0.0
Sma3: Multidrug/pheromone exporter, MDR family, ABC transporter family 0.0
Internal
sp_v3.0_unigene159976 SustainPine v3.0 448
AutoFact: LRR receptor-like serine/threonine-protein kinase EFR [Arabidopsis thaliana] sp|C0LGT6.1|EFR_ARATH RecName: Full=LRR receptor-like serine/threonine-protein kinase EFR; AltName: Full=Elongation factor Tu receptor; Short=EF-Tu receptor; Flags: Precursor gb| 5.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Leucine Rich Repeat, putative 1.699e-18
Putative Complete
sp_v3.0_unigene160172 SustainPine v3.0 426
AutoFact: MDR-like ABC transporter n=4 Tax=Poaceae RepID=Q8GU74_ORYSJ 0.0
FL-Next: tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew). 0.0
Sma3: Multidrug/pheromone exporter, MDR family, ABC transporter family 5.292e-06
Internal
sp_v3.0_unigene161157 SustainPine v3.0 340
AutoFact: Germin-like protein 2 (Fragment) n=2 Tax=Picea abies RepID=Q4VSU6_PICAB 5.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Rhicadhesin receptor, putative 7.235e-18
C-terminus
sp_v3.0_unigene161522 SustainPine v3.0 387
AutoFact: REF4-related 1 protein [Arabidopsis thaliana] dbj|BAB02777.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76780.1| REF4-related 1 protein [Arabidopsis thaliana] 1.0e-23
FL-Next: sp=Mediator of RNA polymerase II transcription subunit 33A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene161597 SustainPine v3.0 424
AutoFact: putative gag-pol polyprotein [Oryza sativa Japonica Group] gb|ABF96256.1| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] 4.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, unclassified 8.591e-07
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain