Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: histone deacetylation

Term: GO:0016575  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene112916 SustainPine v3.0 455
AutoFact: Lysine-specific histone demethylase 1 homolog 3 n=3 Tax=Oryza sativa RepID=LDL3_ORYSJ 3.0e-10
FL-Next: sp=Lysine-specific histone demethylase 1 homolog 3; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Protein LSD1-LIKE 3 2.783e-09
C-terminus
sp_v3.0_unigene118092 SustainPine v3.0 171
AutoFact: pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase 3.0e-11
FL-Next: sp=Lysine-specific histone demethylase 1 homolog 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Protein LSD1-LIKE 2 1.273e-08
Internal
sp_v3.0_unigene140778 SustainPine v3.0 564
AutoFact: WD-40 repeat family protein [Arabidopsis thaliana] dbj|BAB09017.1| unnamed protein product [Arabidopsis thaliana] gb|AAL15328.1| AT5g67320/K8K14_4 [Arabidopsis thaliana] gb|AAN28871.1| At5g67320/K8K14_4 [Arabidopsis thaliana] gb|AED98328.1| WD-40 repeat f 7.0e-34
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene154056 SustainPine v3.0 328
AutoFact: Histone deacetylase (Fragment) n=1 Tax=Nematostella vectensis RepID=A7RFA3_NEMVE 5.0e-37
FL-Next: sp=Histone deacetylase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Histone deacetylase 1.39429e-42
Internal
sp_v3.0_unigene156729 SustainPine v3.0 511
AutoFact: Histone deacetylase family protein n=1 Tax=Dictyostelium fasciculatum RepID=F4PSW2_9MYCE 0.0
FL-Next: sp=Probable histone deacetylase 19; Zea mays (Maize). 0.0
Sma3: Histone deacetylase 1.21072e-42
Internal
sp_v3.0_unigene162648 SustainPine v3.0 177
AutoFact: RecName: Full=Lysine-specific histone demethylase 1 homolog 3; AltName: Full=Flavin-containing amine oxidase domain-containing protein 3; AltName: Full=Protein FLOWERING LOCUS D-LIKE; AltName: Full=Protein LSD1-LIKE 3 emb|CAH68056.1| B0103C08-B0602B01.13 3.0e-12
FL-Next: sp=Lysine-specific histone demethylase 1 homolog 3; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Flavin-containing amine oxidase domain-containing protein, putative 5.237e-09
Internal
sp_v3.0_unigene165513 SustainPine v3.0 239
AutoFact: Histone deacetylase (Fragment) n=7 Tax=rosids RepID=D7SM47_VITVI 4.0e-13
FL-Next: sp=Putative histone deacetylase 10; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene166579 SustainPine v3.0 438
AutoFact: WD-40 repeat family protein [Arabidopsis thaliana] dbj|BAB09017.1| unnamed protein product [Arabidopsis thaliana] gb|AAL15328.1| AT5g67320/K8K14_4 [Arabidopsis thaliana] gb|AAN28871.1| At5g67320/K8K14_4 [Arabidopsis thaliana] gb|AED98328.1| WD-40 repeat f 3.0e-11
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene167606 SustainPine v3.0 229
AutoFact: putative WD-40 repeat protein family [Oryza sativa Japonica Group] dbj|BAD30810.1| WD-40 repeat protein-like [Oryza sativa Japonica Group] 4.0e-25
FL-Next: sp=Notchless protein homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative C-terminus
sp_v3.0_unigene168310 SustainPine v3.0 229
AutoFact: Lysine-specific histone demethylase 1 homolog 3 n=3 Tax=Oryza sativa RepID=LDL3_ORYSJ 5.0e-29
FL-Next: sp=Lysine-specific histone demethylase 1 homolog 3; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: SWIRM domain protein 2.407e-12
Internal
sp_v3.0_unigene206705 SustainPine v3.0 643
AutoFact: WD-40 repeat family protein [Arabidopsis thaliana] dbj|BAB09017.1| unnamed protein product [Arabidopsis thaliana] gb|AAL15328.1| AT5g67320/K8K14_4 [Arabidopsis thaliana] gb|AAN28871.1| At5g67320/K8K14_4 [Arabidopsis thaliana] gb|AED98328.1| WD-40 repeat f 2.0e-28
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene208272 SustainPine v3.0 596
AutoFact: Histone deacetylase (Fragment) n=1 Tax=Vitis vinifera RepID=D7U4N6_VITVI 0.0
FL-Next: sp=Histone deacetylase 19; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Histone deacetylase 3.96708e-42
Internal
sp_v3.0_unigene208697 SustainPine v3.0 341
AutoFact: Histone deacetylase (Fragment) n=7 Tax=rosids RepID=D7SM47_VITVI 6.0e-25
FL-Next: sp=Histone deacetylase 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Histone deacetylase 1.207e-15
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain