Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nuclear pore

Term: GO:0005643  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene37758 SustainPine v3.0 1837
AutoFact: armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] dbj|BAB09724.1| importin beta [Arabidopsis thaliana] gb|AED96362.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Importin beta-1, putative 6.528e-13
C-terminus
sp_v3.0_unigene41049 SustainPine v3.0 199
AutoFact: Unassigned protein
FL-Next: tr=Nuclear pore protein 84/107 containing protein, expressed; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene41057 SustainPine v3.0 430
AutoFact: pfam03810, IBN_N, Importin-beta N-terminal domain 4.0e-13
FL-Next: sp=Exportin-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene41879 SustainPine v3.0 163
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Importin beta-3, putative 6.635e-09
N-terminus
sp_v3.0_unigene42276 SustainPine v3.0 1559
AutoFact: Kinesin, putative n=1 Tax=Ricinus communis RepID=B9RXV1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Kinesin heavy chain, putative 1.16e-15
Complete
sp_v3.0_unigene42837 SustainPine v3.0 200
AutoFact: Kinesin, putative n=1 Tax=Ricinus communis RepID=B9SS38_RICCO 6.0e-27
FL-Next: sp=Kinesin-like protein FLA10; Chlamydomonas reinhardtii (Chlamydomonas smithii). 0.0
Sma3: Kinesin-like protein 3.137e-22
Internal
sp_v3.0_unigene44165 SustainPine v3.0 1240
AutoFact: HASTY [Arabidopsis thaliana] 0.0
FL-Next: sp=Protein HASTY 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative uncharacterized protein At3g05040 6.546e-10
C-terminus
sp_v3.0_unigene45484 SustainPine v3.0 269
AutoFact: armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] dbj|BAB09724.1| importin beta [Arabidopsis thaliana] gb|AED96362.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] 9.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Importin beta-1, putative 2.543e-13
N-terminus
sp_v3.0_unigene46612 SustainPine v3.0 234
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene46674 SustainPine v3.0 478
AutoFact: Nup84_Nup100 domain containing protein 2.0e-05
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene47638 SustainPine v3.0 157
AutoFact: F10B6.25 n=2 Tax=Arabidopsis thaliana RepID=Q9LQU6_ARATH 8.0e-06
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene47965 SustainPine v3.0 383
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene48585 SustainPine v3.0 167
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene49394 SustainPine v3.0 350
AutoFact: nucleoporin 155 [Arabidopsis thaliana] gb|AEE29235.1| nucleoporin 155 [Arabidopsis thaliana] 3.0e-36
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene51165 SustainPine v3.0 162
AutoFact: Unassigned protein 7.0e-05
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene51652 SustainPine v3.0 464
AutoFact: Gag-pol polyprotein n=7 Tax=Glycine max RepID=Q84VH6_SOYBN 9.0e-38
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 4.407e-34
C-terminus
sp_v3.0_unigene51841 SustainPine v3.0 240
AutoFact: RVT_2 domain containing protein 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 9.67e-13
Putative N-terminus
sp_v3.0_unigene52799 SustainPine v3.0 485
AutoFact: Armadillo/beta-catenin-like repeat-containing protein n=2 Tax=Arabidopsis RepID=Q93VS8_ARATH 3.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Importin beta-3, putative 7.34e-09
N-terminus
sp_v3.0_unigene54941 SustainPine v3.0 317
AutoFact: Nucleoporin autopeptidase [Arabidopsis thaliana] ref|NP_001031018.1| Nucleoporin autopeptidase [Arabidopsis thaliana] gb|AAL84948.1| At1g10390/F14N23_29 [Arabidopsis thaliana] gb|AAO23595.1| At1g10390/F14N23_29 [Arabidopsis thaliana] dbj|BAE99032.1| hypot 1.0e-22
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Sma3: Nucleoporin autopeptidase family protein, expressed 1.147e-09
Putative C-terminus
sp_v3.0_unigene55872 SustainPine v3.0 472
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain