Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Pentatricopeptide repeat

Term: IPR002885  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene200872 SustainPine v3.0 226
AutoFact: Pentatricopeptide repeat protein (Fragment) n=1 Tax=Picea abies RepID=B3U1V1_PICAB 6.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat protein 0.0
Internal
sp_v3.0_unigene201034 SustainPine v3.0 173
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: cDNA, clone: J065206N09, full insert sequence 9.747e-06
Internal
sp_v3.0_unigene201119 SustainPine v3.0 397
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat protein 3.388e-31
C-terminus
sp_v3.0_unigene203817 SustainPine v3.0 438
AutoFact: exonuclease family protein [Arabidopsis thaliana] ref|NP_851082.1| exonuclease family protein [Arabidopsis thaliana] ref|NP_851083.1| exonuclease family protein [Arabidopsis thaliana] ref|NP_974842.1| exonuclease family protein [Arabidopsis thaliana] dbj| 9.0e-05
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
C-terminus
sp_v3.0_unigene203927 SustainPine v3.0 300
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Tetratricopeptide-like helical 4.463e-07
Internal
sp_v3.0_unigene204157 SustainPine v3.0 341
AutoFact: CBL-interacting protein kinase-like protein (Fragment) n=42 Tax=Picea sitchensis RepID=E0ZAQ0_PICSI 2.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: CBL-interacting serine/threonine-protein kinase, putative 5.197e-06
Internal
sp_v3.0_unigene204405 SustainPine v3.0 309
AutoFact: Pentatricopeptide repeat protein (Fragment) n=1 Tax=Picea abies RepID=B3U1V1_PICAB 7.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat protein 1.962e-31
C-terminus
sp_v3.0_unigene204427 SustainPine v3.0 490
AutoFact: Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 n=2 Tax=Oryza sativa RepID=MTBC_ORYSJ 4.0e-31
FL-Next: sp=Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; Oryza sativa subsp. japonica (Rice). 0.0
C-terminus
sp_v3.0_unigene204774 SustainPine v3.0 486
AutoFact: Ribosomal protein L15 n=2 Tax=Selaginella moellendorffii RepID=D8QTX2_SELML 0.0
FL-Next: sp=Ribosomal protein L15; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L15 0.0
C-terminus
sp_v3.0_unigene204946 SustainPine v3.0 531
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene205444 SustainPine v3.0 436
AutoFact: Ribosomal protein L15 n=2 Tax=Pucciniales RepID=E3K121_PUCGT 0.0
FL-Next: sp=Ribosomal protein L15; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L15 0.0
N-terminus
sp_v3.0_unigene205565 SustainPine v3.0 575
AutoFact: Ribosomal protein L15 n=2 Tax=Chlamydomonadales RepID=A8I982_CHLRE 0.0
FL-Next: sp=Ribosomal protein L15; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L15 0.0
C-terminus
sp_v3.0_unigene205788 SustainPine v3.0 668
AutoFact: ADP-ribosylation factor-like A1C [Arabidopsis thaliana] gb|AAL62421.1| ADP-RIBOSYLATION FACTOR -like protein [Arabidopsis thaliana] gb|AAM48037.1| ADP-ribosylation factor-like protein [Arabidopsis thaliana] gb|AEE78600.1| ADP-ribosylation factor-like A1C 2.0e-29
FL-Next: tr=ADP-RIBOSYLATION FACTOR-like protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Sma3: Arl8-family small GTPase 2.427e-13
Putative Complete
sp_v3.0_unigene206483 SustainPine v3.0 399
AutoFact: Peptidase S24, S26A and S26B [Medicago truncatula] 2.8026e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: S24-like peptidase 6.743e-09
N-terminus
sp_v3.0_unigene206641 SustainPine v3.0 261
AutoFact: Copia-like retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9ZQE4_ARATH 9.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Gag-Pol polyprotein 2.641e-07
Internal
sp_v3.0_unigene207012 SustainPine v3.0 385
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9R809_RICCO 4.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Jacalin-domain protein 3.411e-06
Putative N-terminus
sp_v3.0_unigene207764 SustainPine v3.0 592
AutoFact: similar to FLAP endonuclease-1 (SW:P39748) [Arabidopsis thaliana] 2.0e-21
FL-Next: sp=Flap endonuclease 1-B; Physcomitrella patens subsp. patens (Moss). 0.0
Sma3: Flap endonuclease 1a 4.233e-09
Internal
sp_v3.0_unigene207780 SustainPine v3.0 558
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LPC4.1|PPR1_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g01970 gb|AAF76475.1|AC020622_9 Contains similarity to an unknown protein gi|AAD26479 from Arabidopsis t 5.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene207967 SustainPine v3.0 310
AutoFact: WD40 repeat protein, COMPASS complex protein n=2 Tax=Physcomitrella patens subsp. patens RepID=A9S674_PHYPA 4.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene208399 SustainPine v3.0 317
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9S1R1_RICCO 9.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain