Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Pentatricopeptide repeat

Term: IPR002885  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene14862 SustainPine v3.0 384
• AutoFact: pfam12854, PPR_1, PPR repeat 2.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene14878 SustainPine v3.0 872
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Tetratricopeptide-like helical 3.902e-17
C-terminus
sp_v3.0_unigene14883 SustainPine v3.0 314
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650 gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] 2.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative pentatricopeptide (PPR) repeat-containing protein 1.857e-07
Internal
sp_v3.0_unigene14902 SustainPine v3.0 356
• AutoFact: Seven-transmembrane-domain protein 1 n=2 Tax=Andropogoneae RepID=B6TVH3_MAIZE 1.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Seven-transmembrane-domain protein 1 9.088e-15
Internal
sp_v3.0_unigene14965 SustainPine v3.0 853
• AutoFact: pentatricopeptide, putative [Oryza sativa Japonica Group] gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 9.237e-11
Internal
sp_v3.0_unigene15034 SustainPine v3.0 627
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 1.887e-12
N-terminus
sp_v3.0_unigene15039 SustainPine v3.0 743
• AutoFact: Pentatricopeptide repeat protein 43 n=1 Tax=Funaria hygrometrica RepID=F5CAD7_FUNHY 5.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene15046 SustainPine v3.0 1692
• AutoFact: Alpha-amylase, putative n=1 Tax=Ricinus communis RepID=B9R8H8_RICCO 0.0
• FL-Next: sp=Probable alpha-amylase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Alpha-amylase 0.0
Complete
sp_v3.0_unigene15090 SustainPine v3.0 610
• AutoFact: DNA methyl transferase4 [Zea mays] gb|AAK40306.1| DNA methyltransferase ZMET4 [Zea mays] gb|ACF82728.1| unknown [Zea mays] 1.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene15105 SustainPine v3.0 315
• AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9R930_RICCO 9.0e-19
• FL-Next: sp=Pentatricopeptide repeat-containing protein At1g18900; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene15232 SustainPine v3.0 414
• AutoFact: glutamine-rich protein 23 [Arabidopsis thaliana] sp|Q9SY69.1|PPR29_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g10270; AltName: Full=Protein GLUTAMINE-RICH PROTEIN 23 gb|AAD32877.1|AC005489_15 F14N23.15 [Arabidopsis thaliana] gb|AEE 1.0e-05
• FL-Next: sp=Pentatricopeptide repeat-containing protein At1g10270; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene15324 SustainPine v3.0 492
• AutoFact: Selenium-binding protein-like n=1 Tax=Oryza sativa Japonica Group RepID=Q8LI18_ORYSJ 9.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene15363 SustainPine v3.0 369
• AutoFact: UDP-glucoronosyl/UDP-glucosyl transferase family protein 2.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene15392 SustainPine v3.0 350
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760 gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana] gb|AEC08881.1| pentatricopeptide repe 2.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene15535 SustainPine v3.0 929
• AutoFact: Eukaryotic initiation factor-like protein n=9 Tax=Oryza RepID=Q84PB3_ORYSJ 0.0
• FL-Next: sp=Eukaryotic initiation factor iso-4F subunit p82-34; Triticum aestivum (Wheat). 0.0
• Sma3: Translation initiation factor eIF(Iso)4G 1.124e-08
Internal
sp_v3.0_unigene15662 SustainPine v3.0 625
• AutoFact: Integrase n=1 Tax=Silene latifolia RepID=Q8S942_SILLA 5.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative pentatricopeptide (PPR) repeat-containing protein 5.022e-14
C-terminus
sp_v3.0_unigene15688 SustainPine v3.0 587
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g23330 dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76753.1| pentatric 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 4.269e-09
Putative C-terminus
sp_v3.0_unigene15757 SustainPine v3.0 575
• AutoFact: Nodulin MtN3-like protein [Arabidopsis thaliana] sp|Q8L9J7.1|SWET1_ARATH RecName: Full=Bidirectional sugar transporter SWEET1; Short=AtSWEET1 gb|AAM65929.1| unknown [Arabidopsis thaliana] gb|AAO42204.1| unknown protein [Arabidopsis thaliana] gb|AAO63896.1 4.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Seven-transmembrane-domain protein 1 4.556e-12
Putative C-terminus
sp_v3.0_unigene15858 SustainPine v3.0 1696
• AutoFact: MtN3_slv domain containing protein 6.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Seven-transmembrane-domain protein 1 3.37e-14
Complete
sp_v3.0_unigene15860 SustainPine v3.0 2511
• AutoFact: Pyruvate decarboxylase 1 n=1 Tax=Lotus corniculatus RepID=Q84V95_LOTCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pyruvate decarboxylase 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain