Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Pentatricopeptide repeat

Term: IPR002885  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene14125 SustainPine v3.0 1126
AutoFact: nodulin MtN3-like protein [Arabidopsis thaliana] sp|Q8LBF7.1|SWET7_ARATH RecName: Full=Bidirectional sugar transporter SWEET7; Short=AtSWEET7 gb|AAM64793.1| contains similarity to Medicago truncatula MtN3 (GB:Y08726) [Arabidopsis thaliana] gb|ABK32158.1| 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Seven-transmembrane-domain protein 1 1.113e-17
Putative Complete
sp_v3.0_unigene14139 SustainPine v3.0 519
AutoFact: APO protein 3 [Arabidopsis thaliana] ref|NP_001119475.1| APO protein 3 [Arabidopsis thaliana] sp|Q9FH50.1|APO3_ARATH RecName: Full=APO protein 3, mitochondrial; Flags: Precursor dbj|BAB08879.1| unnamed protein product [Arabidopsis thaliana] gb|AED97538.1| 3.9937e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: APO protein 3, mitochondrial, putative 3.983e-09
C-terminus
sp_v3.0_unigene14150 SustainPine v3.0 1790
AutoFact: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] gb|AEE79701.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Virulence factor, pectin lyase fold 9.935e-09
Complete
sp_v3.0_unigene14256 SustainPine v3.0 933
AutoFact: polygalacturonase [Arabidopsis thaliana] gb|AEE30389.1| polygalacturonase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Polygalacturonase 0.0
C-terminus
sp_v3.0_unigene14295 SustainPine v3.0 1446
AutoFact: alpha-amylase [Ipomoea nil] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Alpha-amylase 0.0
Complete
sp_v3.0_unigene14367 SustainPine v3.0 577
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q0WLC6.2|PP349_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g34830, chloroplastic; Flags: Precursor gb|AEE86426.1| pentatricopeptide repeat-containing protein [Ara 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene14421 SustainPine v3.0 666
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9T3S4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene14497 SustainPine v3.0 488
AutoFact: Pentatricopeptide-containing protein (Fragment) n=3 Tax=Pseudotsuga RepID=C6F9Z2_PSEMZ 4.99983e-42
FL-Next: sp=Pentatricopeptide repeat-containing protein At1g74750; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene14502 SustainPine v3.0 2304
AutoFact: GTP-binding protein alpha subunit, gna, putative n=1 Tax=Ricinus communis RepID=B9S8Q3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: GTP-binding protein alpha subunit, gna, putative 2.329e-16
Complete
sp_v3.0_unigene14543 SustainPine v3.0 376
AutoFact: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9RT88_RICCO 7.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene14545 SustainPine v3.0 355
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170 emb|CAB16758.1| putative protein [Arabidopsis thaliana] emb|CAB80383.1| putative protein [Arabid 2.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene14577 SustainPine v3.0 1283
AutoFact: Pentatricopeptide repeat protein 78 (Fragment) n=1 Tax=Funaria hygrometrica RepID=F5CAE0_FUNHY 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative pentatricopeptide (PPR) repeat-containing protein 9.517e-14
Putative Complete
sp_v3.0_unigene14593 SustainPine v3.0 839
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene14596 SustainPine v3.0 338
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710 emb|CAB66909.1| putative protein [Arabidopsis thaliana] gb|AEE78579.1| pentatricopeptide repeat- 9.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Tetratricopeptide-like helical 3.652e-07
Internal
sp_v3.0_unigene14611 SustainPine v3.0 505
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SZC0_RICCO 2.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene14645 SustainPine v3.0 443
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9S7Q8_RICCO 6.0e-36
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene14667 SustainPine v3.0 1026
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr18 scaffold_96, whole genome shotgun sequence 7.36e-07
Complete
sp_v3.0_unigene14686 SustainPine v3.0 286
AutoFact: pfam01535, PPR, PPR repeat 9.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 8.376e-20
Internal
sp_v3.0_unigene14766 SustainPine v3.0 576
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SGR5_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene14837 SustainPine v3.0 608
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q8RWS8.1|PP199_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41720; AltName: Full=Protein EMBRYO DEFECTIVE 2654 gb|AAM14084.1| putative salt-inducible protein [Ara 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain