Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Pentatricopeptide repeat

Term: IPR002885  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene9275 SustainPine v3.0 2183
AutoFact: dsRNA-binding protein [Brassica oleracea var. gongylodes] emb|CAD59428.1| dsRNA-binding protein [Brassica oleracea var. gemmifera] 7.00649e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: BcpLH protein 7.149e-09
Complete
sp_v3.0_unigene9283 SustainPine v3.0 1787
AutoFact: nodulin MtN3-like protein [Arabidopsis thaliana] sp|Q8LBF7.1|SWET7_ARATH RecName: Full=Bidirectional sugar transporter SWEET7; Short=AtSWEET7 gb|AAM64793.1| contains similarity to Medicago truncatula MtN3 (GB:Y08726) [Arabidopsis thaliana] gb|ABK32158.1| 4.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Seven-transmembrane-domain protein 1 2.71e-15
Complete
sp_v3.0_unigene9316 SustainPine v3.0 765
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene9437 SustainPine v3.0 217
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q93WC5.1|PP300_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g01990, mitochondrial; Flags: Precursor gb|AAK62637.1| AT4g01990/T7B11_26 [Arabidopsis thaliana] gb|AAL 3.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene9440 SustainPine v3.0 1764
AutoFact: Unassigned protein
FL-Next: sp=Pentatricopeptide repeat-containing protein At2g30100, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene9460 SustainPine v3.0 1238
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g23330 dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76753.1| pentatric 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 1.818e-06
N-terminus
sp_v3.0_unigene9523 SustainPine v3.0 538
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9T4W2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene9606 SustainPine v3.0 428
AutoFact: origin recognition complex subunit 4 [Zea mays] gb|AAL10455.1|AF417484_1 origin recognition complex subunit 4 [Zea mays] 6.0e-26
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative N-terminus
sp_v3.0_unigene9607 SustainPine v3.0 1576
AutoFact: putative NPK1-related protein kinase [Arabidopsis thaliana] emb|CAB79544.1| putative NPK1-related protein kinase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative 2.067e-13
Putative C-terminus
sp_v3.0_unigene9662 SustainPine v3.0 641
AutoFact: pfam01535, PPR, PPR repeat 1.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene9781 SustainPine v3.0 1500
AutoFact: DNA polymerase III subunit epsilon n=3 Tax=Zea mays RepID=B6TZF8_MAIZE 0.0
FL-Next: tr=DNA polymerase III subunit epsilon; Zea mays (Maize). 0.0
Complete
sp_v3.0_unigene9789 SustainPine v3.0 2431
AutoFact: putative bHLH transcription factor [Arabidopsis thaliana] 1.4013e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: BHLH transcription factor 1.373e-17
Complete
sp_v3.0_unigene9828 SustainPine v3.0 341
AutoFact: SAP domain containing protein 4.0e-05
FL-Next: tr=Pentatricopeptide repeat-containing protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene9844 SustainPine v3.0 1407
AutoFact: S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gb|AAL86352.1| unknown protein [Arabidopsis thaliana] gb|AAM67532.1| unknown protein [Arabidopsis thaliana] gb|AEE80126.1| S-adenosyl-L-methionine-dependent methyltran 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Methylase 8.858e-09
Complete
sp_v3.0_unigene9935 SustainPine v3.0 1465
AutoFact: CBL-interacting serine/threonine-protein kinase, putative n=1 Tax=Ricinus communis RepID=B9T407_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: CBL-interacting serine/threonine-protein kinase, putative 6.271e-38
N-terminus
sp_v3.0_unigene10024 SustainPine v3.0 1280
AutoFact: polygalacturonase [Arabidopsis thaliana] sp|Q949Z1.1|PGLR4_ARATH RecName: Full=Polygalacturonase At1g48100; Short=PG; AltName: Full=Pectinase At1g48100; Flags: Precursor gb|AAK92733.1| putative polygalacturonase PG1 [Arabidopsis thaliana] gb|AAM20001.1| p 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Polygalacturonase 0.0
Putative C-terminus
sp_v3.0_unigene10090 SustainPine v3.0 3015
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Complete
sp_v3.0_unigene10285 SustainPine v3.0 2112
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9S1R1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene10357 SustainPine v3.0 1440
AutoFact: DNA-directed RNA polymerase beta chain, putative n=1 Tax=Ricinus communis RepID=B9RR32_RICCO 4.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: BHLH transcription factor 3.807e-15
N-terminus
sp_v3.0_unigene10432 SustainPine v3.0 1537
AutoFact: DnaJ domain-containing protein n=3 Tax=Arabidopsis RepID=Q8GUN6_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr10 scaffold_179, whole genome shotgun sequence 6.084e-06
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain