Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: tRNA processing

Term: GO:0008033  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene167329 SustainPine v3.0 191
AutoFact: tRNA-dihydrouridine synthase 4 [Arabidopsis thaliana] dbj|BAB10956.1| unnamed protein product [Arabidopsis thaliana] gb|AAK83641.1| AT5g67220/K21H1_18 [Arabidopsis thaliana] gb|AAM26724.1| AT5g67220/K21H1_18 [Arabidopsis thaliana] gb|AED98315.1| tRNA-dihy 4.0e-17
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene167564 SustainPine v3.0 138
AutoFact: Squalene monooxygenase n=5 Tax=Araliaceae RepID=ERG1_PANGI 1.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Squalene monooxygenase 2.791e-12
Internal
sp_v3.0_unigene168340 SustainPine v3.0 123
AutoFact: FMN-linked oxidoreductase-like protein protein n=5 Tax=Arabidopsis RepID=Q8H128_ARATH 1.0e-05
FL-Next: tr=Putative uncharacterized protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene184753 SustainPine v3.0 501
AutoFact: T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH 2.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copia-type polyprotein 2.608e-10
Putative C-terminus
sp_v3.0_unigene185897 SustainPine v3.0 406
AutoFact: RecName: Full=tRNA wybutosine-synthesizing protein 2/3/4; Includes: RecName: Full=tRNA wybutosine-synthesizing protein 3 homolog; Includes: RecName: Full=tRNA wybutosine synthesizing protein 2 homolog dbj|BAC20692.1| MET-10+related protein-like [Oryza sat 6.0e-31
FL-Next: sp=tRNA wybutosine-synthesizing protein 2/3/4; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: tRNA wybutosine-synthesizing protein 3 homolog 1.656e-09
Internal
sp_v3.0_unigene187255 SustainPine v3.0 488
AutoFact: Glucose inhibited division protein A, putative n=1 Tax=Ricinus communis RepID=B9RRF2_RICCO 1.0e-20
FL-Next: tr=Glucose inhibited division protein A, putative; Ricinus communis (Castor bean). 0.0
N-terminus
sp_v3.0_unigene188170 SustainPine v3.0 757
AutoFact: Putative Squalene monooxygenase [Oryza sativa Japonica Group] gb|ABF94791.1| Squalene monooxygenase, putative, expressed [Oryza sativa Japonica Group] gb|EAY89139.1| hypothetical protein OsI_10630 [Oryza sativa Indica Group] gb|EAZ26158.1| hypothetical pr 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Squalene monooxygenase, putative 2.492e-25
Internal
sp_v3.0_unigene194418 SustainPine v3.0 493
AutoFact: F6N18.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LPK1_ARATH 4.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 8.935e-12
Internal
sp_v3.0_unigene195053 SustainPine v3.0 84
Sma3: CrtISO 1.289e-08
unknown
sp_v3.0_unigene201923 SustainPine v3.0 885
AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q7Y141_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.093e-28
Internal
sp_v3.0_unigene205044 SustainPine v3.0 501
AutoFact: T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH 3.9937e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copia-type polyprotein 2.159e-10
Internal
sp_v3.0_unigene206356 SustainPine v3.0 755
AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q7Y141_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 7.917e-22
Internal
sp_v3.0_unigene207246 SustainPine v3.0 532
AutoFact: Putative gag-pol polyprotein (Fragment) n=1 Tax=Picea abies RepID=B2KZG9_PICAB 3.0e-39
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, unclassified 4.779e-13
C-terminus
sp_v3.0_unigene207394 SustainPine v3.0 450
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q338J6_ORYSJ 1.0e-30
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, unclassified 1.169e-12
Putative C-terminus
sp_v3.0_unigene207434 SustainPine v3.0 447
AutoFact: Unassigned protein
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Sma3: Retrotransposon protein, putative, unclassified 1.205e-10
C-terminus
sp_v3.0_unigene210488 SustainPine v3.0 259
AutoFact: T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH 3.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, unclassified 5.719e-13
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain