Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: tRNA processing

Term: GO:0008033  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene149298 SustainPine v3.0 278
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q338J6_ORYSJ 4.0e-21
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Sma3: Retrotransposon protein, putative, unclassified 5.954e-10
Internal
sp_v3.0_unigene149495 SustainPine v3.0 141
AutoFact: YTH domain containing protein 2.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Yth domain-containing protein, putative 6.857e-24
Internal
sp_v3.0_unigene149606 SustainPine v3.0 138
AutoFact: carotenoid isomerase [Arabidopsis thaliana] sp|Q9M9Y8.2|CRTSO_ARATH RecName: Full=Carotenoid isomerase, chloroplastic; Short=CrtISO; AltName: Full=Carotenoid and chloroplast regulation protein 2; Flags: Precursor gb|AEE28042.1| carotenoid isomerase [Arabi 3.0e-12
FL-Next: sp=Prolycopene isomerase, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: CrtISO 3.752e-13
Internal
sp_v3.0_unigene149774 SustainPine v3.0 428
AutoFact: T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH 3.00018e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, unclassified 7.028e-13
Internal
sp_v3.0_unigene149985 SustainPine v3.0 283
AutoFact: ribonuclease P subunit Rpp30 [Arabidopsis thaliana] gb|AED97261.1| ribonuclease P subunit Rpp30 [Arabidopsis thaliana] 4.0e-14
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene151761 SustainPine v3.0 243
AutoFact: tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Flavobacterium johnsoniae UW101 RepID=MNMG_FLAJ1 6.0e-36
FL-Next: tr=Putative uncharacterized protein; Ectocarpus siliculosus (Brown alga). 0.0
Internal
sp_v3.0_unigene153359 SustainPine v3.0 425
AutoFact: tRNA wybutosine synthesizing protein 2-like protein [Arabidopsis thaliana] sp|Q8W4K1.1|TYW23_ARATH RecName: Full=tRNA wybutosine-synthesizing protein 2/3/4; Includes: RecName: Full=tRNA wybutosine-synthesizing protein 3 homolog; Includes: RecName: Full=tR 8.0e-25
FL-Next: sp=tRNA wybutosine-synthesizing protein 2/3/4; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene155548 SustainPine v3.0 524
AutoFact: pyridoxine biosynthesis protein [Triticum aestivum] 3.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pyridoxine biosynthesis protein 1.422e-15
C-terminus
sp_v3.0_unigene159494 SustainPine v3.0 480
AutoFact: Unassigned protein
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 7.72e-14
C-terminus
sp_v3.0_unigene160834 SustainPine v3.0 316
AutoFact: Pseudouridine synthase n=1 Tax=Picea sitchensis RepID=A9P2G1_PICSI 1.0e-34
FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pseudouridylate synthase 2.528e-06
Putative C-terminus
sp_v3.0_unigene162885 SustainPine v3.0 486
AutoFact: T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH 7.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copia-type polyprotein 5.305e-11
Internal
sp_v3.0_unigene162923 SustainPine v3.0 471
AutoFact: F6N18.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LPK1_ARATH 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copia-type polyprotein 2.608e-10
Internal
sp_v3.0_unigene163059 SustainPine v3.0 339
AutoFact: Probable pyridoxine biosynthesis SNZERR n=1 Tax=Suberites domuncula RepID=PDX1_SUBDO 4.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pyridoxine biosynthesis protein 1.601e-15
C-terminus
sp_v3.0_unigene163094 SustainPine v3.0 414
AutoFact: Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH 2.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, unclassified 4.145e-13
Internal
sp_v3.0_unigene164389 SustainPine v3.0 217
AutoFact: rve domain containing protein 2.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, unclassified 4.806e-20
Internal
sp_v3.0_unigene164717 SustainPine v3.0 391
AutoFact: T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH 3.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copia-type polyprotein 1.328e-10
Internal
sp_v3.0_unigene165406 SustainPine v3.0 470
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QLK1_ORYSJ 1.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative gag-pol polyprotein 1.536e-13
Internal
sp_v3.0_unigene165499 SustainPine v3.0 297
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q338J6_ORYSJ 9.0e-26
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, unclassified 8.126e-13
Putative C-terminus
sp_v3.0_unigene165858 SustainPine v3.0 537
AutoFact: T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.208e-17
Internal
sp_v3.0_unigene166364 SustainPine v3.0 143
AutoFact: ribonuclease P subunit Rpp30 [Arabidopsis thaliana] gb|AED97261.1| ribonuclease P subunit Rpp30 [Arabidopsis thaliana] 4.0e-08
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain