Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: tRNA processing

Term: GO:0008033  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene77402 SustainPine v3.0 346
AutoFact: ribonuclease P subunit Rpp30 [Arabidopsis thaliana] gb|AED97261.1| ribonuclease P subunit Rpp30 [Arabidopsis thaliana] 3.0e-11
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene78111 SustainPine v3.0 237
AutoFact: putative tRNA pseudouridine synthase [Arabidopsis thaliana] sp|O22928.1|PUSH_ARATH RecName: Full=Putative tRNA pseudouridine synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase gb|AAC16945.1| putative pseudouridine 9.0e-10
FL-Next: sp=Putative tRNA pseudouridine synthase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene78120 SustainPine v3.0 275
AutoFact: phenylalanyl-tRNA synthetase, mitochondrial precursor [Neurospora crassa OR74A] emb|CAB91431.2| related to mitochondrial phenylalanyl-tRNA synthetase (MSF1) [Neurospora crassa] gb|EAA27725.1| phenylalanyl-tRNA synthetase, mitochondrial precursor [Neurospo 5.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP binding protein 4.208e-06
Internal
sp_v3.0_unigene79134 SustainPine v3.0 95
AutoFact: Unassigned protein
FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene80365 SustainPine v3.0 146
AutoFact: glucose-inhibited division family A protein [Arabidopsis thaliana] gb|AAD28643.1| similar to glucose inhibited division protein A from prokaryotes [Arabidopsis thaliana] gb|AEC06233.1| glucose-inhibited division family A protein [Arabidopsis thaliana] 1.0e-05
FL-Next: tr=Glucose inhibited division protein A, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene81158 SustainPine v3.0 165
AutoFact: FMN-linked oxidoreductase-like protein protein n=5 Tax=Arabidopsis RepID=Q8H128_ARATH 5.0e-16
FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Internal
sp_v3.0_unigene93544 SustainPine v3.0 1786
AutoFact: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RIE1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene93694 SustainPine v3.0 1025
AutoFact: tRNA wybutosine-synthesizing protein 2/3/4 n=1 Tax=Oryza sativa Japonica Group RepID=TYW23_ORYSJ 0.0
FL-Next: sp=tRNA wybutosine-synthesizing protein 2/3/4; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: tRNA wybutosine-synthesizing protein 3 homolog 2.399e-09
C-terminus
sp_v3.0_unigene94691 SustainPine v3.0 493
AutoFact: Glucose inhibited division protein A, putative n=1 Tax=Ricinus communis RepID=B9RRF2_RICCO 6.0e-35
FL-Next: tr=Glucose inhibited division protein A, putative; Ricinus communis (Castor bean). 0.0
N-terminus
sp_v3.0_unigene94986 SustainPine v3.0 597
AutoFact: Copia-type polyprotein, putative n=4 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH 9.99967e-42
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, unclassified 2.1e-11
C-terminus
sp_v3.0_unigene96580 SustainPine v3.0 345
AutoFact: cytoplasmic tRNA 2-thiolation protein 1 [Arabidopsis thaliana] sp|O64862.2|CTU1_ARATH RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 dbj|BAC41934.1| unknown protein [Arabidopsis thaliana] gb|AAP 9.0e-32
FL-Next: sp=Cytoplasmic tRNA 2-thiolation protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Cytoplasmic tRNA adenylyltransferase 1 1.807e-13
C-terminus
sp_v3.0_unigene99855 SustainPine v3.0 563
AutoFact: Pseudouridine synthase n=1 Tax=Picea sitchensis RepID=D5AA47_PICSI 0.0
FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pseudouridylate synthase 2.436e-13
Internal
sp_v3.0_unigene100393 SustainPine v3.0 797
AutoFact: PP-loop [Anabaena variabilis ATCC 29413] gb|ABA20135.1| PP-loop [Anabaena variabilis ATCC 29413] 6.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: tRNA(Ile)-lysidine synthase, chloroplastic 5.586e-15
N-terminus
sp_v3.0_unigene101808 SustainPine v3.0 647
AutoFact: protein raspberry 3 [Arabidopsis thaliana] gb|AAK64168.1| unknown protein [Arabidopsis thaliana] gb|AEE76923.1| protein raspberry 3 [Arabidopsis thaliana] 2.0e-09
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Raspberry3, putative 8.772e-06
C-terminus
sp_v3.0_unigene104085 SustainPine v3.0 550
AutoFact: Pseudouridine synthase n=1 Tax=Picea sitchensis RepID=D5AE97_PICSI 0.0
FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pseudouridylate synthase 1.253e-19
C-terminus
sp_v3.0_unigene104264 SustainPine v3.0 560
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QLK1_ORYSJ 1.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 6.614e-19
Internal
sp_v3.0_unigene104393 SustainPine v3.0 545
AutoFact: Gag-Pol polyprotein n=1 Tax=Lotus japonicus RepID=B8YLY7_LOTJA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.023e-23
Internal
sp_v3.0_unigene104774 SustainPine v3.0 524
AutoFact: T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH 1.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copia-type polyprotein 5.904e-11
Putative C-terminus
sp_v3.0_unigene106051 SustainPine v3.0 203
AutoFact: glucose-inhibited division A family protein [Musa acuminata] 4.0e-23
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Internal
sp_v3.0_unigene106226 SustainPine v3.0 482
AutoFact: Unassigned protein
FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain