Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: tRNA processing

Term: GO:0008033  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene49634 SustainPine v3.0 1053
AutoFact: pfam02475, Met_10, Met-10+ like-protein 4.0e-35
FL-Next: sp=tRNA wybutosine-synthesizing protein 2/3/4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: tRNA wybutosine-synthesizing protein 3 homolog 2.544e-09
C-terminus
sp_v3.0_unigene51635 SustainPine v3.0 476
AutoFact: Maturase K n=364 Tax=Pinaceae RepID=MATK_PICEN 7.00649e-45
FL-Next: sp=Maturase K; Pinus brutia subsp. brutia. Plastid; Chloroplast. 0.0
C-terminus
sp_v3.0_unigene53512 SustainPine v3.0 238
AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q7Y141_ORYSJ 2.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 8.433e-23
Internal
sp_v3.0_unigene54198 SustainPine v3.0 469
AutoFact: putative ribonuclease P/MRP protein subunit POP5 [Arabidopsis thaliana] sp|Q6AWV1.1|POP5_ARATH RecName: Full=Probable ribonuclease P/MRP protein subunit POP5; AltName: Full=Protein EMBRYO DEFECTIVE 1687 gb|AAT85743.1| At1g04635 [Arabidopsis thaliana] gb|A 3.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene57299 SustainPine v3.0 168
AutoFact: Carotenoid isomerase, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9SDN0_RICCO 1.0e-21
FL-Next: sp=Prolycopene isomerase, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Carotenoid isomerase 4.699e-13
Internal
sp_v3.0_unigene60046 SustainPine v3.0 367
AutoFact: Pseudouridine synthase n=1 Tax=Picea sitchensis RepID=D5AE97_PICSI 4.0e-33
FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pseudouridylate synthase 5.7e-26
C-terminus
sp_v3.0_unigene62028 SustainPine v3.0 229
AutoFact: Carotenoid isomerase n=1 Tax=Chrysanthemum x morifolium RepID=Q2HXK3_CHRMO 1.0e-14
FL-Next: sp=Prolycopene isomerase 2, chloroplastic; Oncidium hybrid cultivar (Orchid). 0.0
Sma3: CrtISO 1.216e-12
Internal
sp_v3.0_unigene62581 SustainPine v3.0 347
AutoFact: Pseudouridine synthase (Fragment) n=1 Tax=Vitis vinifera RepID=D7SJM4_VITVI 4.0e-22
FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pseudouridylate synthase 2.183e-06
Putative C-terminus
sp_v3.0_unigene62605 SustainPine v3.0 290
AutoFact: Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Camponotus floridanus RepID=E2AKP5_9HYME 3.0e-23
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, unclassified 3.443e-16
Putative C-terminus
sp_v3.0_unigene63007 SustainPine v3.0 112
AutoFact: Pseudouridine synthase n=1 Tax=Picea sitchensis RepID=D5AE97_PICSI 6.0e-09
FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene64129 SustainPine v3.0 274
AutoFact: Maturase K n=33 Tax=Cupressaceae RepID=Q9MSV0_9CONI 7.0e-27
FL-Next: sp=Maturase K 1; Pinus yunnanensis (Yunnan pine). Plastid; Chloroplast. 0.0
Sma3: Maturase K 1.495e-27
Internal
sp_v3.0_unigene64358 SustainPine v3.0 139
AutoFact: [J] COG0042 tRNA-dihydrouridine synthase 1.0e-11
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene64413 SustainPine v3.0 187
AutoFact: YTH domain containing protein 4.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Yth domain-containing protein, putative 2.147e-27
Internal
sp_v3.0_unigene64470 SustainPine v3.0 204
AutoFact: nuclear ribonuclease Z [Arabidopsis thaliana] sp|Q8LGU7.3|RNZN_ARATH RecName: Full=Nuclear ribonuclease Z; Short=RNase Z; AltName: Full=Zinc phosphodiesterase NUZ; AltName: Full=tRNA 3 endonuclease; AltName: Full=tRNase Z emb|CAD22100.1| RNase Z [Arabidop 5.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nuclear ribonuclease Z 2.337e-09
Putative C-terminus
sp_v3.0_unigene65365 SustainPine v3.0 180
AutoFact: tRNA(Ile)-lysidine synthetase [Nostoc punctiforme PCC 73102] gb|ACC84249.1| tRNA(Ile)-lysidine synthetase [Nostoc punctiforme PCC 73102] 1.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene66920 SustainPine v3.0 234
AutoFact: IPP transferase-like protein [Arabidopsis thaliana] 1.0e-15
FL-Next: Isoform 2 of tRNA dimethylallyltransferase 9 OS=Arabidopsis thaliana GN=IPT9 0.0
Sma3: Isopentenyl transferase 4.691e-11
Internal
sp_v3.0_unigene67147 SustainPine v3.0 300
AutoFact: Copia-type polyprotein, putative n=4 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH 8.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, unclassified 1.396e-08
Internal
sp_v3.0_unigene72818 SustainPine v3.0 225
AutoFact: Pseudouridine synthase n=1 Tax=Picea sitchensis RepID=D5AE97_PICSI 6.0e-28
FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pseudouridylate synthase 1.349e-16
Putative N-terminus
sp_v3.0_unigene73266 SustainPine v3.0 299
AutoFact: Signal transducer, putative n=1 Tax=Ricinus communis RepID=B9RXL2_RICCO 2.0e-19
FL-Next: sp=tRNA wybutosine-synthesizing protein 2/3/4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene75161 SustainPine v3.0 326
AutoFact: Copia-type polyprotein n=1 Tax=Glycine max RepID=C0JJI2_SOYBN 5.0e-27
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Putative pol polyprotein 1.264e-08
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain