Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: tRNA-binding domain

Term: IPR002547  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene850 SustainPine v3.0 989
AutoFact: OB-fold nucleic acid binding domain-containing protein n=2 Tax=Arabidopsis RepID=Q93VB0_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Probable methionyl-tRNA synthetase 2.074e-08
C-terminus
sp_v3.0_unigene1874 SustainPine v3.0 3166
AutoFact: methionyl-tRNA synthetase [Oryza sativa] 0.0
FL-Next: sp=Probable methionine--tRNA ligase; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Chromosome chr5 scaffold_98, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene2536 SustainPine v3.0 994
AutoFact: Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] emb|CAB75817.1| putative protein [Arabidopsis thaliana] gb|AAK76594.1| unknown protein [Arabidopsis thaliana] gb|AAM44914.1| unknown protein [Arabidopsis thaliana] gb|AAM63861.1| unknown [A 9.80909e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene3223 SustainPine v3.0 3113
AutoFact: translation initiation factor [Pisum sativum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative translation initiation factor IF-2 3.803e-14
Complete
sp_v3.0_unigene6394 SustainPine v3.0 1531
AutoFact: methionyl-tRNA synthetase (ISS) [Ostreococcus tauri] emb|CAL49998.1| methionyl-tRNA synthetase (ISS) [Ostreococcus tauri] 9.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene13838 SustainPine v3.0 570
AutoFact: methionyl-tRNA synthetase [Bacteroides fragilis YCH46] ref|ZP_04843858.1| methionyl-tRNA synthetase [Bacteroides sp. 3_2_5] ref|ZP_06094931.1| methionyl-tRNA synthetase [Bacteroides sp. 2_1_16] ref|ZP_08592150.1| methionyl-tRNA synthetase [Bacteroides sp. 2.0e-11
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Putative C-terminus
sp_v3.0_unigene13918 SustainPine v3.0 834
AutoFact: methionyl-tRNA synthetase [Arabidopsis thaliana] gb|AEE79380.1| methionyl-tRNA synthetase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Methionyl-tRNA synthetase 1.592e-08
Internal
sp_v3.0_unigene22297 SustainPine v3.0 3101
AutoFact: methionyl-tRNA synthetase [Oryza sativa] 0.0
FL-Next: sp=Probable methionine--tRNA ligase; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Methionyl-tRNA synthetase, putative 5.958e-12
Complete
sp_v3.0_unigene26002 SustainPine v3.0 1481
AutoFact: Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] emb|CAB75817.1| putative protein [Arabidopsis thaliana] gb|AAK76594.1| unknown protein [Arabidopsis thaliana] gb|AAM44914.1| unknown protein [Arabidopsis thaliana] gb|AAM63861.1| unknown [A 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Probable methionyl-tRNA synthetase 1.599e-08
Complete
sp_v3.0_unigene44104 SustainPine v3.0 365
AutoFact: Methionine-tRNA synthetase, putative n=1 Tax=Ricinus communis RepID=B9RWD7_RICCO 1.0e-29
FL-Next: sp=Probable methionine--tRNA ligase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Probable methionyl-tRNA synthetase 8.985e-09
N-terminus
sp_v3.0_unigene53049 SustainPine v3.0 390
AutoFact: methionyl-tRNA synthetase [Arabidopsis thaliana] sp|Q9SVN5.1|SYM_ARATH RecName: Full=Probable methionyl-tRNA synthetase; AltName: Full=Methionine--tRNA ligase; Short=MetRS emb|CAB36842.1| methionyl-tRNA synthetase-like protein [Arabidopsis thaliana] emb|C 2.00386e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Probable methionyl-tRNA synthetase 8.985e-09
Internal
sp_v3.0_unigene55968 SustainPine v3.0 184
AutoFact: methionyl-tRNA synthetase [Arabidopsis thaliana] sp|Q9SVN5.1|SYM_ARATH RecName: Full=Probable methionyl-tRNA synthetase; AltName: Full=Methionine--tRNA ligase; Short=MetRS emb|CAB36842.1| methionyl-tRNA synthetase-like protein [Arabidopsis thaliana] emb|C 2.0e-15
FL-Next: sp=Probable methionine--tRNA ligase; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Probable methionyl-tRNA synthetase 8.261e-09
Internal
sp_v3.0_unigene58167 SustainPine v3.0 156
AutoFact: methionyl-tRNA synthetase [Arabidopsis thaliana] sp|Q9SVN5.1|SYM_ARATH RecName: Full=Probable methionyl-tRNA synthetase; AltName: Full=Methionine--tRNA ligase; Short=MetRS emb|CAB36842.1| methionyl-tRNA synthetase-like protein [Arabidopsis thaliana] emb|C 2.0e-14
FL-Next: sp=Probable methionine--tRNA ligase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative C-terminus
sp_v3.0_unigene74948 SustainPine v3.0 193
AutoFact: methionyl-tRNA synthetase [Oryza sativa] 8.0e-17
FL-Next: sp=Probable methionine--tRNA ligase; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Probable methionyl-tRNA synthetase 7.067e-09
Internal
sp_v3.0_unigene81444 SustainPine v3.0 243
AutoFact: OB-fold nucleic acid binding domain-containing protein n=2 Tax=Arabidopsis RepID=Q93VB0_ARATH 7.0e-28
FL-Next: sp=Probable methionine--tRNA ligase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene131387 SustainPine v3.0 338
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley). 0.0
Sma3: Methionyl-tRNA synthetase, putative 7.31e-06
C-terminus
sp_v3.0_unigene152495 SustainPine v3.0 386
AutoFact: Methionyl-tRNA synthetase, putative n=1 Tax=Ricinus communis RepID=B9S4F8_RICCO 1.0e-19
FL-Next: sp=Probable methionine--tRNA ligase; Oryza sativa subsp. japonica (Rice). 0.0
C-terminus
sp_v3.0_unigene156973 SustainPine v3.0 365
AutoFact: methionyl-tRNA synthetase-like protein (ISS) [Ostreococcus tauri] emb|CAL55424.1| methionyl-tRNA synthetase-like protein (ISS) [Ostreococcus tauri] 1.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene158267 SustainPine v3.0 447
AutoFact: pfam01588, tRNA_bind, Putative tRNA binding domain 6.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Probable methionyl-tRNA synthetase 5.167e-09
Internal
sp_v3.0_unigene158753 SustainPine v3.0 203
AutoFact: translation initiation factor IF-2 [Plasmodium vivax SaI-1] gb|EDL46367.1| translation initiation factor IF-2, putative [Plasmodium vivax] 7.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain