Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA topological change

Term: GO:0006265  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene1243 SustainPine v3.0 3732
AutoFact: DNA topoisomerase 2 (Fragment) n=1 Tax=Vitis vinifera RepID=D7T341_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene1518 SustainPine v3.0 1621
AutoFact: myosin XI [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Myosin XI 4.089e-27
Complete
sp_v3.0_unigene1554 SustainPine v3.0 1048
AutoFact: Myosin XI, putative n=1 Tax=Ricinus communis RepID=B9RQX7_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Sma3: Myosin XI, putative 8.464e-23
Internal
sp_v3.0_unigene3273 SustainPine v3.0 2627
AutoFact: DNA gyrase subunit A, chloroplastic/mitochondrial n=1 Tax=Nicotiana benthamiana RepID=GYRA_NICBE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Probable DNA gyrase subunit A, chloroplastic/mitochondrial 5.669e-09
Complete
sp_v3.0_unigene3305 SustainPine v3.0 4215
AutoFact: ubiquitin carboxyl-terminal hydrolase 12 [Arabidopsis thaliana] gb|AAK25908.1|AF360198_1 putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb|AAN13185.1| putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb|AED91040.1| ubiq 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin carboxyl-terminal hydrolase 1.959e-11
Complete
sp_v3.0_unigene3574 SustainPine v3.0 2304
AutoFact: Myosin class 11-1 n=1 Tax=Adiantum capillus-veneris RepID=Q5NTX1_ADICA 0.0
FL-Next: tr=Myosin class 11-1; Adiantum capillus-veneris (Maidenhair fern). 0.0
Sma3: Myosin XI, putative 3.083e-19
C-terminus
sp_v3.0_unigene4673 SustainPine v3.0 2310
AutoFact: E3 ubiquitin-protein ligase CIP8 [Arabidopsis thaliana] sp|Q9SPL2.1|CIP8_ARATH RecName: Full=E3 ubiquitin-protein ligase CIP8; AltName: Full=COP1-interacting protein 8 gb|AAD56636.1|AF162150_1 COP1-interacting protein CIP8 [Arabidopsis thaliana] dbj|BAA97 6.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene5399 SustainPine v3.0 2312
AutoFact: putative topoisomerase VI subunit B [Oryza sativa Indica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr6 scaffold_3, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene5766 SustainPine v3.0 2502
AutoFact: DNA topoisomerase 2 n=1 Tax=Micromonas sp. RCC299 RepID=C1E5N4_MICSR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA topoisomerase 2 0.0
Putative C-terminus
sp_v3.0_unigene6434 SustainPine v3.0 1486
AutoFact: DNA topoisomerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7SU60_VITVI 0.0
FL-Next: sp=DNA topoisomerase; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
C-terminus
sp_v3.0_unigene6887 SustainPine v3.0 2461
AutoFact: ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana] 0.0
FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 13; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Ubiquitin carboxyl-terminal hydrolase 5.716e-07
C-terminus
sp_v3.0_unigene8881 SustainPine v3.0 1880
AutoFact: Ubiquitin carboxyl-terminal hydrolase 12 n=8 Tax=Brassicaceae RepID=UBP12_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin carboxyl-terminal hydrolase 4.139e-09
Complete
sp_v3.0_unigene9121 SustainPine v3.0 1933
AutoFact: DNA topoisomerase 1 beta [Arabidopsis thaliana] dbj|BAB08548.1| DNA topoisomerase I [Arabidopsis thaliana] dbj|BAE98926.1| DNA topoisomerase I like protein [Arabidopsis thaliana] gb|AED96615.1| DNA topoisomerase 1 beta [Arabidopsis thaliana] 0.0
FL-Next: sp=DNA topoisomerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Topoisomerase I 4.127e-25
C-terminus
sp_v3.0_unigene9122 SustainPine v3.0 2655
AutoFact: Myosin class 11-2 n=1 Tax=Adiantum capillus-veneris RepID=Q5NTX0_ADICA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Myosin XI, putative 2.329e-12
Complete
sp_v3.0_unigene14373 SustainPine v3.0 351
AutoFact: DNA topoisomerase, type IA, core n=1 Tax=Arabidopsis thaliana RepID=F4JRX3_ARATH 1.0e-24
FL-Next: sp=DNA topoisomerase; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene14390 SustainPine v3.0 603
AutoFact: DNA topoisomerase n=2 Tax=Vitis vinifera RepID=A5AWM5_VITVI 0.0
FL-Next: sp=DNA topoisomerase; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene19456 SustainPine v3.0 2550
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_59.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TE60_VITVI 1.4013e-45
FL-Next: sp=DNA topoisomerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene23476 SustainPine v3.0 1318
AutoFact: DNA topoisomerase 2 (Fragment) n=1 Tax=Vitis vinifera RepID=D7T341_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA topoisomerase 2 0.0
N-terminus
sp_v3.0_unigene24154 SustainPine v3.0 1126
AutoFact: DNA topoisomerase II, putative n=1 Tax=Ricinus communis RepID=B9RVN3_RICCO 4.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene26723 SustainPine v3.0 367
AutoFact: Myosin heavy chain class XI E2 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q6UAL2_ORYSJ 0.0
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Myosin XI, putative 4.141e-23
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain