Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA topological change

Term: GO:0006265  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene72143 SustainPine v3.0 341
AutoFact: Integrase n=1 Tax=Populus trichocarpa RepID=Q0ZCD0_POPTR 5.0e-31
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
N-terminus
sp_v3.0_unigene74063 SustainPine v3.0 363
AutoFact: Ubiquitin carboxyl-terminal hydrolase 7 n=1 Tax=Camponotus floridanus RepID=E2B1Q7_9HYME 0.0
FL-Next: Isoform 2 of Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 0.0
Sma3: Ubiquitin carboxyl-terminal hydrolase, putative 8.25e-07
Internal
sp_v3.0_unigene74405 SustainPine v3.0 335
AutoFact: DNA topoisomerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7U9K8_VITVI 1.0e-37
FL-Next: sp=DNA topoisomerase; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene76805 SustainPine v3.0 102
AutoFact: DNA topoisomerase 2 (Fragment) n=1 Tax=Vitis vinifera RepID=D7T341_VITVI 2.0e-09
FL-Next: sp=DNA topoisomerase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA topoisomerase 2 1.565e-22
Internal
sp_v3.0_unigene76984 SustainPine v3.0 247
AutoFact: Myosin XI-F n=1 Tax=Nicotiana benthamiana RepID=B0CN60_NICBE 2.0e-34
FL-Next: tr=Myosin XI-F; Nicotiana benthamiana. 0.0
Sma3: Myosin XI, putative 4.119e-23
Internal
sp_v3.0_unigene77106 SustainPine v3.0 208
AutoFact: Topoisomerase I n=1 Tax=Pisum sativum RepID=O24307_PEA 7.0e-26
FL-Next: sp=DNA topoisomerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Topoisomerase I 2.348e-21
Putative C-terminus
sp_v3.0_unigene80151 SustainPine v3.0 206
AutoFact: DNA topoisomerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U3N3_PHYPA 6.0e-23
FL-Next: sp=DNA topoisomerase; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Putative DNA topoisomerase III beta 1.635e-08
Internal
sp_v3.0_unigene93591 SustainPine v3.0 1416
AutoFact: Strong similarity to F22O13.22 gi|3063460 myosin homolog from A. thaliana BAC gb|AC003981 [Arabidopsis thaliana] 0.0
FL-Next: tr=Uncharacterized protein; Zea mays (Maize). 0.0
Sma3: Myosin XI, putative 2.423e-19
Putative Complete
sp_v3.0_unigene93791 SustainPine v3.0 1497
AutoFact: DNA gyrase subunit A, chloroplastic/mitochondrial n=1 Tax=Nicotiana benthamiana RepID=GYRA_NICBE 0.0
FL-Next: sp=DNA gyrase subunit A, chloroplastic/mitochondrial; Nicotiana benthamiana. 0.0
Sma3: Probable DNA gyrase subunit A, chloroplastic/mitochondrial 7.399e-09
N-terminus
sp_v3.0_unigene94344 SustainPine v3.0 1353
AutoFact: Myosin XI, putative n=1 Tax=Ricinus communis RepID=B9S596_RICCO 0.0
FL-Next: tr=Myosin XI, putative; Ricinus communis (Castor bean). 0.0
Sma3: Myosin XI 5.192e-27
Internal
sp_v3.0_unigene99099 SustainPine v3.0 217
AutoFact: DNA topoisomerase 2 n=3 Tax=Selaginella moellendorffii RepID=D8RNR7_SELML 3.0e-28
FL-Next: sp=DNA topoisomerase 2; Pisum sativum (Garden pea). 0.0
Sma3: DNA topoisomerase 2 0.0
Internal
sp_v3.0_unigene99311 SustainPine v3.0 259
AutoFact: DNA topoisomerase 2 (Fragment) n=2 Tax=Physcomitrella patens subsp. patens RepID=A9RWX5_PHYPA 6.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA topoisomerase 2 5.79e-26
N-terminus
sp_v3.0_unigene101874 SustainPine v3.0 346
AutoFact: DIL domain containing protein 3.0e-06
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Myosin XI, putative 3.949e-16
C-terminus
sp_v3.0_unigene102688 SustainPine v3.0 683
AutoFact: unconventional myosin [Helianthus annuus] 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Sma3: Myosin XI, putative 4.075e-23
Internal
sp_v3.0_unigene103054 SustainPine v3.0 449
AutoFact: DNA topoisomerase n=1 Tax=Ricinus communis RepID=B9RRL8_RICCO 3.0e-28
FL-Next: sp=DNA topoisomerase; Ricinus communis (Castor bean). 0.0
Sma3: Putative DNA topoisomerase III beta 7.196e-09
C-terminus
sp_v3.0_unigene104413 SustainPine v3.0 667
AutoFact: Ubiquitin specific protease 12 n=1 Tax=Nicotiana tabacum RepID=B6V765_TOBAC 0.0
FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 12; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Ubiquitin carboxyl-terminal hydrolase, putative 9.986e-07
Internal
sp_v3.0_unigene104609 SustainPine v3.0 450
AutoFact: Myosin XI, putative n=1 Tax=Ricinus communis RepID=B9RWS3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Myosin XI 4.391e-28
Internal
sp_v3.0_unigene105211 SustainPine v3.0 263
AutoFact: Myosin class 11-1 n=1 Tax=Adiantum capillus-veneris RepID=Q5NTX1_ADICA 8.0e-33
FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Sma3: Myosin XI, putative 4.487e-23
Internal
sp_v3.0_unigene106163 SustainPine v3.0 370
AutoFact: Myosin class 11-1 n=1 Tax=Adiantum capillus-veneris RepID=Q5NTX1_ADICA 4.2039e-45
FL-Next: tr=Myosin class 11-1; Adiantum capillus-veneris (Maidenhair fern). 0.0
Sma3: Myosin XI, putative 5.765e-23
Internal
sp_v3.0_unigene108389 SustainPine v3.0 556
AutoFact: ubiquitin carboxyl-terminal hydrolase 12 [Arabidopsis thaliana] gb|AAK25908.1|AF360198_1 putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb|AAN13185.1| putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb|AED91040.1| ubiq 4.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin carboxyl-terminal hydrolase, putative 1.022e-06
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain