Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: chromosome

Term: GO:0005694  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene72476 SustainPine v3.0 284
AutoFact: putative SMC protein [Oryza sativa Japonica Group] gb|EEC79459.1| hypothetical protein OsI_20467 [Oryza sativa Indica Group] gb|EEE64226.1| hypothetical protein OsJ_19059 [Oryza sativa Japonica Group] 7.0e-18
FL-Next: sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene72604 SustainPine v3.0 161
AutoFact: RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb|CAA66480.1| transcription factor [Vicia faba var. minor] 1.0e-13
FL-Next: sp=FACT complex subunit SSRP1; Vicia faba (Broad bean) (Faba vulgaris). 0.0
Sma3: Recombination signal sequence recognition protein 1 9.034e-18
Internal
sp_v3.0_unigene74405 SustainPine v3.0 335
AutoFact: DNA topoisomerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7U9K8_VITVI 1.0e-37
FL-Next: sp=DNA topoisomerase; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene75373 SustainPine v3.0 320
AutoFact: GlimmerM protein 276 n=1 Tax=Beta vulgaris RepID=Q20CC6_BETVU 3.0e-28
FL-Next: sp=Serine/threonine-protein kinase ATR; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Serine/threonine-protein kinase ATR 1.052e-08
Internal
sp_v3.0_unigene76805 SustainPine v3.0 102
AutoFact: DNA topoisomerase 2 (Fragment) n=1 Tax=Vitis vinifera RepID=D7T341_VITVI 2.0e-09
FL-Next: sp=DNA topoisomerase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA topoisomerase 2 1.565e-22
Internal
sp_v3.0_unigene76984 SustainPine v3.0 247
AutoFact: Myosin XI-F n=1 Tax=Nicotiana benthamiana RepID=B0CN60_NICBE 2.0e-34
FL-Next: tr=Myosin XI-F; Nicotiana benthamiana. 0.0
Sma3: Myosin XI, putative 4.119e-23
Internal
sp_v3.0_unigene77106 SustainPine v3.0 208
AutoFact: Topoisomerase I n=1 Tax=Pisum sativum RepID=O24307_PEA 7.0e-26
FL-Next: sp=DNA topoisomerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Topoisomerase I 2.348e-21
Putative C-terminus
sp_v3.0_unigene79173 SustainPine v3.0 231
AutoFact: Structural maintenance of chromosomes protein 4 n=2 Tax=Arabidopsis thaliana RepID=SMC4_ARATH 7.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Structural maintenance of chromosomes protein 4 2.745e-09
Internal
sp_v3.0_unigene79401 SustainPine v3.0 235
AutoFact: Serine/threonine-protein kinase ATM n=3 Tax=rosids RepID=ATM_ARATH 2.0e-28
FL-Next: sp=Serine/threonine-protein kinase ATM; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene79561 SustainPine v3.0 283
AutoFact: GlimmerM protein 276 n=1 Tax=Beta vulgaris RepID=Q20CC6_BETVU 7.0e-10
FL-Next: sp=Serine/threonine-protein kinase ATR; Oryza sativa subsp. indica (Rice). 0.0
Internal
sp_v3.0_unigene79573 SustainPine v3.0 219
AutoFact: ataxia-telangiectasia mutated protein (Atm) [Arabidopsis thaliana] 2.0e-23
FL-Next: sp=Serine/threonine-protein kinase ATM; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene79760 SustainPine v3.0 274
AutoFact: serine/threonine-protein kinase ATR [Arabidopsis thaliana] sp|Q9FKS4.2|ATR_ARATH RecName: Full=Serine/threonine-protein kinase ATR; Short=AtATR; AltName: Full=Ataxia telangiectasia-mutated and Rad3-related homolog; AltName: Full=DNA repair protein ATR; Al 4.0e-31
FL-Next: sp=Serine/threonine-protein kinase ATR; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Serine/threonine-protein kinase ATR 1.701e-08
Internal
sp_v3.0_unigene80151 SustainPine v3.0 206
AutoFact: DNA topoisomerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U3N3_PHYPA 6.0e-23
FL-Next: sp=DNA topoisomerase; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Putative DNA topoisomerase III beta 1.635e-08
Internal
sp_v3.0_unigene93591 SustainPine v3.0 1416
AutoFact: Strong similarity to F22O13.22 gi|3063460 myosin homolog from A. thaliana BAC gb|AC003981 [Arabidopsis thaliana] 0.0
FL-Next: tr=Uncharacterized protein; Zea mays (Maize). 0.0
Sma3: Myosin XI, putative 2.423e-19
Putative Complete
sp_v3.0_unigene93791 SustainPine v3.0 1497
AutoFact: DNA gyrase subunit A, chloroplastic/mitochondrial n=1 Tax=Nicotiana benthamiana RepID=GYRA_NICBE 0.0
FL-Next: sp=DNA gyrase subunit A, chloroplastic/mitochondrial; Nicotiana benthamiana. 0.0
Sma3: Probable DNA gyrase subunit A, chloroplastic/mitochondrial 7.399e-09
N-terminus
sp_v3.0_unigene94344 SustainPine v3.0 1353
AutoFact: Myosin XI, putative n=1 Tax=Ricinus communis RepID=B9S596_RICCO 0.0
FL-Next: tr=Myosin XI, putative; Ricinus communis (Castor bean). 0.0
Sma3: Myosin XI 5.192e-27
Internal
sp_v3.0_unigene95647 SustainPine v3.0 488
AutoFact: DNA repair protein RAD50 [Arabidopsis thaliana] sp|Q9SL02.2|RAD50_ARATH RecName: Full=DNA repair protein RAD50; Short=AtRAD50 gb|AAF36810.1|AF168748_1 DNA repair-recombination protein [Arabidopsis thaliana] gb|AAD15407.2| putative RAD50 DNA repair protein 0.0
FL-Next: sp=DNA repair protein RAD50; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Rad50 DNA repair/recombination protein 2.261e-13
C-terminus
sp_v3.0_unigene98805 SustainPine v3.0 473
AutoFact: OmpH multi-domain protein 3.0e-05
FL-Next: sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene99099 SustainPine v3.0 217
AutoFact: DNA topoisomerase 2 n=3 Tax=Selaginella moellendorffii RepID=D8RNR7_SELML 3.0e-28
FL-Next: sp=DNA topoisomerase 2; Pisum sativum (Garden pea). 0.0
Sma3: DNA topoisomerase 2 0.0
Internal
sp_v3.0_unigene99311 SustainPine v3.0 259
AutoFact: DNA topoisomerase 2 (Fragment) n=2 Tax=Physcomitrella patens subsp. patens RepID=A9RWX5_PHYPA 6.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA topoisomerase 2 5.79e-26
N-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain