Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chromosome

Term: GO:0005694  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene7237 SustainPine v3.0 2151
AutoFact: SMC_N multi-domain protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SMC3 protein 3.564e-09
Putative Complete
sp_v3.0_unigene7486 SustainPine v3.0 3630
AutoFact: E3 ubiquitin-protein ligase BRE1-like 1 [Arabidopsis thaliana] sp|Q8RXD6.1|BRE1A_ARATH RecName: Full=E3 ubiquitin-protein ligase BRE1-like 1; Short=AtBRE1; AltName: Full=Protein HISTONE MONOUBIQUITINATION 1; Short=AtHUB1 gb|AAL91211.1| unknown protein [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: E3 ubiquitin-protein ligase BRE1-like 2 2.373e-08
Complete
sp_v3.0_unigene8790 SustainPine v3.0 995
AutoFact: DNA mismatch repair protein -like [Oryza sativa Japonica Group] 9.94922e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene9121 SustainPine v3.0 1933
AutoFact: DNA topoisomerase 1 beta [Arabidopsis thaliana] dbj|BAB08548.1| DNA topoisomerase I [Arabidopsis thaliana] dbj|BAE98926.1| DNA topoisomerase I like protein [Arabidopsis thaliana] gb|AED96615.1| DNA topoisomerase 1 beta [Arabidopsis thaliana] 0.0
FL-Next: sp=DNA topoisomerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Topoisomerase I 4.127e-25
C-terminus
sp_v3.0_unigene9122 SustainPine v3.0 2655
AutoFact: Myosin class 11-2 n=1 Tax=Adiantum capillus-veneris RepID=Q5NTX0_ADICA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Myosin XI, putative 2.329e-12
Complete
sp_v3.0_unigene9266 SustainPine v3.0 418
AutoFact: DNA mismatch repair protein -like [Oryza sativa Japonica Group] 4.0e-27
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Putative N-terminus
sp_v3.0_unigene9429 SustainPine v3.0 844
AutoFact: SMC_hinge multi-domain protein 2.0e-19
FL-Next: sp=MAR-binding filament-like protein 1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
Sma3: SMC3 protein 1.945e-09
Internal
sp_v3.0_unigene11164 SustainPine v3.0 1495
AutoFact: putative SMC protein [Oryza sativa Japonica Group] gb|EEC79459.1| hypothetical protein OsI_20467 [Oryza sativa Indica Group] gb|EEE64226.1| hypothetical protein OsJ_19059 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Structural maintenance of chromosomes protein 4 1.736e-09
Internal
sp_v3.0_unigene11966 SustainPine v3.0 746
AutoFact: DNA repair protein RAD50, putative n=1 Tax=Ricinus communis RepID=B9S9Y8_RICCO 0.0
FL-Next: sp=DNA repair protein RAD50; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Rad50 DNA repair/recombination protein 9.67e-09
N-terminus
sp_v3.0_unigene12183 SustainPine v3.0 1484
AutoFact: structural maintenance of chromosomes (SMC) - like protein [Arabidopsis thaliana] 0.0
FL-Next: sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Condensin complex component 1.047e-07
N-terminus
sp_v3.0_unigene12236 SustainPine v3.0 1047
AutoFact: RecName: Full=Serine/threonine-protein kinase ATR dbj|BAD61693.1| putative AtRAD3 [Oryza sativa Japonica Group] dbj|BAD62537.1| putative AtRAD3 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Serine/threonine-protein kinase ATR; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Serine/threonine-protein kinase ATR 2.245e-08
C-terminus
sp_v3.0_unigene12633 SustainPine v3.0 4218
AutoFact: putative SMC protein [Oryza sativa Japonica Group] gb|EEC79459.1| hypothetical protein OsI_20467 [Oryza sativa Indica Group] gb|EEE64226.1| hypothetical protein OsJ_19059 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Structural maintenance of chromosomes protein 4 2.544e-09
Complete
sp_v3.0_unigene12639 SustainPine v3.0 2713
AutoFact: Global transcription factor group (Fragment) n=1 Tax=Populus trichocarpa RepID=B9I6M9_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Facilitates chromatin transcription complex subunit SPT16 8.582e-13
Complete
sp_v3.0_unigene13697 SustainPine v3.0 994
AutoFact: SMC-like protein [Arabidopsis thaliana] gb|AAD54770.1|AF120933_1 SMC-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: SMC-like protein 2.873e-09
C-terminus
sp_v3.0_unigene14373 SustainPine v3.0 351
AutoFact: DNA topoisomerase, type IA, core n=1 Tax=Arabidopsis thaliana RepID=F4JRX3_ARATH 1.0e-24
FL-Next: sp=DNA topoisomerase; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene14390 SustainPine v3.0 603
AutoFact: DNA topoisomerase n=2 Tax=Vitis vinifera RepID=A5AWM5_VITVI 0.0
FL-Next: sp=DNA topoisomerase; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene16838 SustainPine v3.0 686
AutoFact: RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb|CAA66480.1| transcription factor [Vicia faba var. minor] 5.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Recombination signal sequence recognition protein 1 4.994e-17
Putative Complete
sp_v3.0_unigene18806 SustainPine v3.0 673
AutoFact: RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb|CAA66480.1| transcription factor [Vicia faba var. minor] 1.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Recombination signal sequence recognition protein 1 4.994e-17
Internal
sp_v3.0_unigene19091 SustainPine v3.0 517
AutoFact: ataxia-telangiectasia mutated protein (Atm) [Arabidopsis thaliana] 0.0
FL-Next: sp=Serine/threonine-protein kinase ATM; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene19456 SustainPine v3.0 2550
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_59.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TE60_VITVI 1.4013e-45
FL-Next: sp=DNA topoisomerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain