Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Ribosomal protein L40e

Term: IPR001975  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene147603 SustainPine v3.0 465
AutoFact: Polyubiquitin 4 UBQ4 n=1 Tax=Arabidopsis thaliana RepID=Q0WRN6_ARATH 1.0e-36
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Putative Complete
sp_v3.0_unigene147604 SustainPine v3.0 579
AutoFact: Polyubiquitin 4 UBQ4 n=1 Tax=Arabidopsis thaliana RepID=Q0WRN6_ARATH 0.0
FL-Next: tr=Polyubiquitin; Pinus sylvestris (Scots pine). 0.0
Sma3: Polyubiquitin 2.167e-10
C-terminus
sp_v3.0_unigene147611 SustainPine v3.0 406
AutoFact: Polyubiquitin 4 UBQ4 n=1 Tax=Arabidopsis thaliana RepID=Q0WRN6_ARATH 0.0
FL-Next: tr=Polyubiquitin; Pinus sylvestris (Scots pine). 0.0
Sma3: Bi-ubiquitin 1.725e-08
Putative Complete
sp_v3.0_unigene147617 SustainPine v3.0 672
AutoFact: polyubiquitin [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Polyubiquitin 9.356e-08
Putative Complete
sp_v3.0_unigene147618 SustainPine v3.0 704
AutoFact: Polyubiquitin 4 UBQ4 n=1 Tax=Arabidopsis thaliana RepID=Q0WRN6_ARATH 0.0
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Ubiquitin, putative 1.58e-10
Putative Complete
sp_v3.0_unigene147622 SustainPine v3.0 454
AutoFact: ubiquitin precursor [Hevea brasiliensis] 0.0
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Bi-ubiquitin 1.725e-08
Putative Complete
sp_v3.0_unigene147623 SustainPine v3.0 958
AutoFact: putative polyubiquitin [Arabidopsis thaliana] 0.0
FL-Next: tr=Ubiquitin-like protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Sma3: Polyubiquitin 9.799e-08
Complete
sp_v3.0_unigene147626 SustainPine v3.0 538
AutoFact: polyubiquitin [Euphorbia characias] 0.0
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Bi-ubiquitin 1.777e-08
Putative Complete
sp_v3.0_unigene147629 SustainPine v3.0 770
AutoFact: Ubiquitin n=5 Tax=Tetrahymena pyriformis RepID=Q27191_TETPY 0.0
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Ubiquitin, putative 1.63e-10
Putative Complete
sp_v3.0_unigene147630 SustainPine v3.0 457
AutoFact: polyubiquitin [Pinus sylvestris] 0.0
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Polyubiquitin 1.073e-07
Putative Complete
sp_v3.0_unigene147631 SustainPine v3.0 266
AutoFact: Polyubiquitin 4 UBQ4 n=1 Tax=Arabidopsis thaliana RepID=Q0WRN6_ARATH 2.0e-38
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Putative Complete
sp_v3.0_unigene147637 SustainPine v3.0 717
AutoFact: Ubiquitin (Ribosomal protein L40), putative n=1 Tax=Schistosoma mansoni RepID=C4Q9U2_SCHMA 0.0
FL-Next: tr=Polyubiquitin; Pinus sylvestris (Scots pine). 0.0
Sma3: Bi-ubiquitin 1.637e-08
C-terminus
sp_v3.0_unigene147640 SustainPine v3.0 557
AutoFact: Polyubiquitin 4 UBQ4 n=1 Tax=Arabidopsis thaliana RepID=Q0WRN6_ARATH 0.0
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Bi-ubiquitin 1.712e-08
Putative Complete
sp_v3.0_unigene147643 SustainPine v3.0 509
AutoFact: 60S ribosomal protein L40 n=1 Tax=Puccinia graminis f. sp. tritici CRL 75-36-700-3 RepID=E3KFB8_PUCGT 2.0e-36
FL-Next: tr=Ubiquitin; Morus bombycis. 0.0
Complete
sp_v3.0_unigene147644 SustainPine v3.0 383
AutoFact: Polyubiquitin 4 UBQ4 n=1 Tax=Arabidopsis thaliana RepID=Q0WRN6_ARATH 0.0
FL-Next: tr=Polyubiquitin; Pinus sylvestris (Scots pine). 0.0
Internal
sp_v3.0_unigene147690 SustainPine v3.0 768
AutoFact: Ubiquitin [Medicago truncatula] 1.0e-36
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Putative N-terminus
sp_v3.0_unigene148448 SustainPine v3.0 288
AutoFact: ubiquitin extension protein [Capsicum annuum] 4.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene148683 SustainPine v3.0 118
AutoFact: [O] COG5272 Ubiquitin 4.0e-15
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Putative C-terminus
sp_v3.0_unigene149288 SustainPine v3.0 134
AutoFact: ubiquitin C variant [Homo sapiens] 2.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene150493 SustainPine v3.0 203
AutoFact: Polyubiquitin 5 n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9BYC3_9EUKA 9.0e-24
FL-Next: tr=Polyubiquitin; Pinus sylvestris (Scots pine). 0.0
Sma3: Ubiquitin 1.963e-07
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain