Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: LisH dimerisation motif

Term: IPR006594  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene7141 SustainPine v3.0 1952
AutoFact: LisH/CRA/RING-U-box domain-containing protein [Arabidopsis thaliana] emb|CAB38936.1| putative protein [Arabidopsis thaliana] emb|CAB80453.1| putative protein [Arabidopsis thaliana] gb|AAV66093.1| At4g37880 [Arabidopsis thaliana] gb|AAX22273.1| At4g37880 [ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Sporulation protein RMD5, putative 7.567e-09
Complete
sp_v3.0_unigene7490 SustainPine v3.0 1000
AutoFact: Unassigned protein
FL-Next: sp=DDB1- and CUL4-associated factor homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene8788 SustainPine v3.0 434
AutoFact: WD-40 repeat protein [Solanum lycopersicum] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene9430 SustainPine v3.0 400
AutoFact: HEAT repeat-containing protein [Arabidopsis thaliana] gb|AAL47427.1| AT5g16210/T21H19_130 [Arabidopsis thaliana] gb|AED92261.1| HEAT repeat-containing protein [Arabidopsis thaliana] 4.0e-38
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene11158 SustainPine v3.0 1723
AutoFact: pfam00400, WD40, WD domain, G-beta repeat 1.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: WD-repeat protein, putative 2.346e-14
Putative Complete
sp_v3.0_unigene12509 SustainPine v3.0 926
AutoFact: transcription initiation factor TFIID subunit D4 [Arabidopsis thaliana] gb|AAR28022.1| TAF5 [Arabidopsis thaliana] gb|AED93406.1| transcription initiation factor TFIID subunit D4 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene12667 SustainPine v3.0 3184
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: WD-repeat protein, putative 7.938e-12
Putative Complete
sp_v3.0_unigene13079 SustainPine v3.0 1635
AutoFact: Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: WD-repeat protein, putative 2.811e-09
Putative Complete
sp_v3.0_unigene13782 SustainPine v3.0 772
AutoFact: HEAT repeat-containing protein-like n=3 Tax=Oryza sativa RepID=Q5QMW8_ORYSJ 0.0
FL-Next: tr=AT5g16210/T21H19_130; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene14169 SustainPine v3.0 465
AutoFact: Unassigned protein
FL-Next: sp=Transcriptional corepressor LEUNIG; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Transcriptional corepressor LEUNIG 1.89e-09
N-terminus
sp_v3.0_unigene17349 SustainPine v3.0 3114
AutoFact: WD-40 repeat protein-like [Oryza sativa Japonica Group] gb|EAZ41606.1| hypothetical protein OsJ_26138 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Topless-related protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Beta transducin-like protein, putative 3.64e-08
Putative C-terminus
sp_v3.0_unigene18138 SustainPine v3.0 1573
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: WD-repeat protein, putative 8.705e-12
Complete
sp_v3.0_unigene18320 SustainPine v3.0 668
AutoFact: WD-40 repeat family protein [Arabidopsis thaliana] dbj|BAB09017.1| unnamed protein product [Arabidopsis thaliana] gb|AAL15328.1| AT5g67320/K8K14_4 [Arabidopsis thaliana] gb|AAN28871.1| At5g67320/K8K14_4 [Arabidopsis thaliana] gb|AED98328.1| WD-40 repeat f 6.0e-34
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene18665 SustainPine v3.0 627
AutoFact: WD-40 repeat family protein [Arabidopsis thaliana] dbj|BAB09017.1| unnamed protein product [Arabidopsis thaliana] gb|AAL15328.1| AT5g67320/K8K14_4 [Arabidopsis thaliana] gb|AAN28871.1| At5g67320/K8K14_4 [Arabidopsis thaliana] gb|AED98328.1| WD-40 repeat f 5.0e-34
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene18731 SustainPine v3.0 1610
AutoFact: LisH/CRA/RING-U-box domain-containing protein [Arabidopsis thaliana] emb|CAB82702.1| putative protein [Arabidopsis thaliana] gb|ABH04583.1| At3g55070 [Arabidopsis thaliana] gb|AEE79335.1| LisH/CRA/RING-U-box domain-containing protein [Arabidopsis thaliana 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene19802 SustainPine v3.0 467
AutoFact: Topless-related protein 1 [Arabidopsis thaliana] sp|Q0WV90.3|TPR1_ARATH RecName: Full=Topless-related protein 1; AltName: Full=Protein MODIFIER OF SNC1 10 gb|AEE36412.1| Topless-related protein 1 [Arabidopsis thaliana] 8.00001e-41
FL-Next: sp=Topless-related protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: WD-repeat protein, putative 3.29e-12
Internal
sp_v3.0_unigene19917 SustainPine v3.0 525
AutoFact: WD-repeat protein, putative 2.0e-38
FL-Next: sp=Topless-related protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: WD-repeat protein, putative 2.556e-07
Internal
sp_v3.0_unigene20413 SustainPine v3.0 4670
AutoFact: [R] COG2319 FOG: WD40 repeat 5.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: WD-repeat protein, putative 1.451e-11
Complete
sp_v3.0_unigene20459 SustainPine v3.0 1650
AutoFact: Lysine-specific histone demethylase, putative n=1 Tax=Ricinus communis RepID=B9R844_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SWIRM domain protein 2.541e-12
N-terminus
sp_v3.0_unigene20877 SustainPine v3.0 1257
AutoFact: LisH and RanBPM domain-containing protein [Arabidopsis thaliana] gb|AAO24554.1| At1g61150 [Arabidopsis thaliana] dbj|BAF00099.1| hypothetical protein [Arabidopsis thaliana] gb|AEE33789.1| LisH and RanBPM domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain