Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: LisH dimerisation motif

Term: IPR006594  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene164033 SustainPine v3.0 123
AutoFact: Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like n=1 Tax=Medicago truncatula RepID=Q2HW32_MEDTR 1.0e-07
FL-Next: sp=Topless-related protein 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene165807 SustainPine v3.0 188
AutoFact: protein TOPLESS [Arabidopsis thaliana] ref|NP_849672.1| protein TOPLESS [Arabidopsis thaliana] ref|NP_001031050.1| protein TOPLESS [Arabidopsis thaliana] ref|NP_001031051.1| protein TOPLESS [Arabidopsis thaliana] sp|Q94AI7.1|TPL_ARATH RecName: Full=Protei 8.0e-12
FL-Next: sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene166579 SustainPine v3.0 438
AutoFact: WD-40 repeat family protein [Arabidopsis thaliana] dbj|BAB09017.1| unnamed protein product [Arabidopsis thaliana] gb|AAL15328.1| AT5g67320/K8K14_4 [Arabidopsis thaliana] gb|AAN28871.1| At5g67320/K8K14_4 [Arabidopsis thaliana] gb|AED98328.1| WD-40 repeat f 3.0e-11
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene167606 SustainPine v3.0 229
AutoFact: putative WD-40 repeat protein family [Oryza sativa Japonica Group] dbj|BAD30810.1| WD-40 repeat protein-like [Oryza sativa Japonica Group] 4.0e-25
FL-Next: sp=Notchless protein homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative C-terminus
sp_v3.0_unigene168310 SustainPine v3.0 229
AutoFact: Lysine-specific histone demethylase 1 homolog 3 n=3 Tax=Oryza sativa RepID=LDL3_ORYSJ 5.0e-29
FL-Next: sp=Lysine-specific histone demethylase 1 homolog 3; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: SWIRM domain protein 2.407e-12
Internal
sp_v3.0_unigene182921 SustainPine v3.0 624
AutoFact: Unassigned protein
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
C-terminus
sp_v3.0_unigene184194 SustainPine v3.0 1239
AutoFact: LisH and RanBPM domain-containing protein [Arabidopsis thaliana] gb|AAO24554.1| At1g61150 [Arabidopsis thaliana] dbj|BAF00099.1| hypothetical protein [Arabidopsis thaliana] gb|AEE33789.1| LisH and RanBPM domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Uncharacterized protein; Lotus japonicus (Lotus corniculatus var. japonicus). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene187166 SustainPine v3.0 524
AutoFact: Unassigned protein
FL-Next: sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative C-terminus
sp_v3.0_unigene189331 SustainPine v3.0 654
AutoFact: Unassigned protein
FL-Next: sp=Topless-related protein 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: WD-repeat protein, putative 2.093e-09
C-terminus
sp_v3.0_unigene189378 SustainPine v3.0 681
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: WD-repeat protein, putative 8.705e-12
C-terminus
sp_v3.0_unigene189613 SustainPine v3.0 310
AutoFact: Unassigned protein
FL-Next: sp=Topless-related protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene195427 SustainPine v3.0 445
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: WD-repeat protein, putative 5.825e-12
Internal
sp_v3.0_unigene198267 SustainPine v3.0 505
AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9RVD2_RICCO 9.00054e-42
FL-Next: sp=Topless-related protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene201648 SustainPine v3.0 635
AutoFact: protein TOPLESS [Arabidopsis thaliana] ref|NP_849672.1| protein TOPLESS [Arabidopsis thaliana] ref|NP_001031050.1| protein TOPLESS [Arabidopsis thaliana] ref|NP_001031051.1| protein TOPLESS [Arabidopsis thaliana] sp|Q94AI7.1|TPL_ARATH RecName: Full=Protei 9.0e-21
FL-Next: sp=Topless-related protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: WD-40 repeat protein-like 4.194e-07
Internal
sp_v3.0_unigene202690 SustainPine v3.0 301
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene206412 SustainPine v3.0 287
AutoFact: LisH and RanBPM domain-containing protein [Arabidopsis thaliana] gb|AAO24554.1| At1g61150 [Arabidopsis thaliana] dbj|BAF00099.1| hypothetical protein [Arabidopsis thaliana] gb|AEE33789.1| LisH and RanBPM domain-containing protein [Arabidopsis thaliana] 7.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pg4 2.643e-09
N-terminus
sp_v3.0_unigene206705 SustainPine v3.0 643
AutoFact: WD-40 repeat family protein [Arabidopsis thaliana] dbj|BAB09017.1| unnamed protein product [Arabidopsis thaliana] gb|AAL15328.1| AT5g67320/K8K14_4 [Arabidopsis thaliana] gb|AAN28871.1| At5g67320/K8K14_4 [Arabidopsis thaliana] gb|AED98328.1| WD-40 repeat f 2.0e-28
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene207810 SustainPine v3.0 498
AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9RWJ4_RICCO 3.0e-36
FL-Next: sp=Transcriptional corepressor LEUNIG; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: WD-repeat protein, putative 7.894e-10
Internal
sp_v3.0_unigene208644 SustainPine v3.0 337
AutoFact: Unassigned protein
FL-Next: sp=Topless-related protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: WD-repeat protein, putative 1.642e-07
Internal
sp_v3.0_unigene208774 SustainPine v3.0 286
AutoFact: Topless-related protein 1 [Arabidopsis thaliana] sp|Q0WV90.3|TPR1_ARATH RecName: Full=Topless-related protein 1; AltName: Full=Protein MODIFIER OF SNC1 10 gb|AEE36412.1| Topless-related protein 1 [Arabidopsis thaliana] 2.0e-13
FL-Next: sp=Topless-related protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: WD-40 repeat protein-like 7.003e-07
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain