Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: nucleotide-excision repair

Term: GO:0006289  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene138386 SustainPine v3.0 476
• AutoFact: PPR domain containing protein 2.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 1.492e-10
Putative N-terminus
sp_v3.0_unigene143038 SustainPine v3.0 415
• AutoFact: basal transcription factor complex TTD-A subunit [Arabidopsis thaliana] gb|AAR24163.1| At1g12400 [Arabidopsis thaliana] gb|AAR92302.1| At1g12400 [Arabidopsis thaliana] gb|AEE28875.1| basal transcription factor complex TTD-A subunit [Arabidopsis thaliana] 4.0e-16
• FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice). 0.0
Complete
sp_v3.0_unigene148062 SustainPine v3.0 425
• AutoFact: pentatricopeptide, putative [Oryza sativa Japonica Group] gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group] 6.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat protein 1.719e-26
C-terminus
sp_v3.0_unigene148332 SustainPine v3.0 435
• AutoFact: PPR multi-domain protein 1.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 0.0
Internal
sp_v3.0_unigene148552 SustainPine v3.0 477
• AutoFact: pentatricopeptide (PPR) repeat-containing protein-like protein [Oryza sativa Japonica Group] dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein [Oryza sativa Japonica Group] 9.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 2.472e-35
Putative N-terminus
sp_v3.0_unigene148845 SustainPine v3.0 411
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide, putative, expressed 6.555e-08
C-terminus
sp_v3.0_unigene149328 SustainPine v3.0 106
• AutoFact: Pentatricopeptide repeat protein (Fragment) n=1 Tax=Bazzania trilobata RepID=B3U1L9_BAZTR 5.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat protein 0.0
Internal
sp_v3.0_unigene149983 SustainPine v3.0 300
• AutoFact: DNA repair protein UVH3 [Arabidopsis thaliana] sp|Q9ATY5.1|UVH3_ARATH RecName: Full=DNA repair protein UVH3; AltName: Full=ERCC5 homolog; AltName: Full=RAD2 homolog; Short=AtRAD2; Short=AtUVH3; Short=AtXPG; AltName: Full=UV hypersensitive protein 3; AltNa 1.0e-35
• FL-Next: sp=DNA repair protein UVH3; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene151885 SustainPine v3.0 351
• AutoFact: ATP-dependent chaperone ClpB n=1 Tax=Rubrivivax benzoatilyticus JA2 RepID=F3LW36_9BURK 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Heat shock protein 101 4.114e-16
N-terminus
sp_v3.0_unigene152508 SustainPine v3.0 377
• AutoFact: ATP-dependent Clp protease ATP-binding subunit ClpA n=3 Tax=Sphingomonadaceae RepID=D4Z0E8_SPHJU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-dependent clp protease 6.635e-09
Putative C-terminus
sp_v3.0_unigene152947 SustainPine v3.0 525
• AutoFact: UvrABC system protein B n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z7U7_9GAMM 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Exinuclease ABC subunits B and C-containing protein 4.289e-10
Putative C-terminus
sp_v3.0_unigene153301 SustainPine v3.0 422
• AutoFact: Heat shock protein 101 n=2 Tax=Arabidopsis RepID=HS101_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Heat shock protein 101 6.752e-16
Internal
sp_v3.0_unigene161761 SustainPine v3.0 385
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g57430, chloroplastic; Flags: Precursor gb|AEE79654.1| pentatricopeptide repeat-containing protein [Ara 2.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat protein 3.723e-24
C-terminus
sp_v3.0_unigene165624 SustainPine v3.0 400
• AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RIP1_RICCO 8.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide, putative, expressed 1.184e-14
C-terminus
sp_v3.0_unigene167044 SustainPine v3.0 282
• AutoFact: DNA repair protein Rad4 [Medicago truncatula] 3.0e-24
• FL-Next: sp=Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene174953 SustainPine v3.0 214
• AutoFact: Cuticle_3 multi-domain protein 4.0e-10
coding
sp_v3.0_unigene182885 SustainPine v3.0 749
• AutoFact: DNA repair protein UVH3 [Arabidopsis thaliana] sp|Q9ATY5.1|UVH3_ARATH RecName: Full=DNA repair protein UVH3; AltName: Full=ERCC5 homolog; AltName: Full=RAD2 homolog; Short=AtRAD2; Short=AtUVH3; Short=AtXPG; AltName: Full=UV hypersensitive protein 3; AltNa 0.0
• FL-Next: sp=DNA repair protein UVH3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene183928 SustainPine v3.0 561
• AutoFact: putative transcription factor [Arabidopsis thaliana] 2.0e-10
• FL-Next: tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley). 0.0
C-terminus
sp_v3.0_unigene199362 SustainPine v3.0 339
• AutoFact: Pentatricopeptide repeat protein 78 (Fragment) n=1 Tax=Funaria hygrometrica RepID=F5CAE0_FUNHY 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide (PPR) repeat-containing protein-like 4.641e-12
C-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain