Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleotide-excision repair

Term: GO:0006289  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene21114 SustainPine v3.0 1038
AutoFact: Chaperone clpb, putative n=1 Tax=Ricinus communis RepID=B9RLP7_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Heat shock protein 101 2.677e-16
Putative Complete
sp_v3.0_unigene24647 SustainPine v3.0 963
AutoFact: ATP-dependent Clp protease ATP-binding subunit ClpA n=49 Tax=Pseudomonadaceae RepID=A6V4G6_PSEA7 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Heat shock protein 101 4.098e-16
N-terminus
sp_v3.0_unigene27713 SustainPine v3.0 717
AutoFact: RAD23 n=2 Tax=Pinaceae RepID=B5M6R6_PINSY 3.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Uv excision repair protein rad23, putative 1.217e-11
N-terminus
sp_v3.0_unigene29236 SustainPine v3.0 888
AutoFact: xeroderma pigmentosum group C-complementing protein [Arabidopsis thaliana] ref|NP_001031894.1| xeroderma pigmentosum group C-complementing protein [Arabidopsis thaliana] gb|AAL32833.1| Unknown protein [Arabidopsis thaliana] gb|AAQ56802.1| At5g16630 [Arabi 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene32549 SustainPine v3.0 810
AutoFact: basal transcription factor complex TTD-A subunit [Arabidopsis thaliana] gb|AAR24163.1| At1g12400 [Arabidopsis thaliana] gb|AAR92302.1| At1g12400 [Arabidopsis thaliana] gb|AEE28875.1| basal transcription factor complex TTD-A subunit [Arabidopsis thaliana] 4.0e-18
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice). 0.0
Complete
sp_v3.0_unigene34217 SustainPine v3.0 821
AutoFact: Pentatricopeptide repeat-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L3A6_ARALL 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 1.398e-10
Putative Complete
sp_v3.0_unigene34928 SustainPine v3.0 1127
AutoFact: RAD23-like n=2 Tax=Solanum tuberosum RepID=Q38JH6_SOLTU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Uv excision repair protein rad23, putative 2.64e-11
N-terminus
sp_v3.0_unigene35389 SustainPine v3.0 882
AutoFact: RAD23 n=2 Tax=Pinaceae RepID=B5M6R6_PINSY 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA repair protein RAD23 1.078e-13
C-terminus
sp_v3.0_unigene38875 SustainPine v3.0 436
AutoFact: DNA repair protein Rad4 [Medicago truncatula] 3.0e-31
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene42819 SustainPine v3.0 3367
AutoFact: ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic n=3 Tax=core eudicotyledons RepID=CLPAB_SOLLC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic 0.0
Complete
sp_v3.0_unigene44635 SustainPine v3.0 354
AutoFact: xeroderma pigmentosum group C-complementing protein [Arabidopsis thaliana] ref|NP_001031894.1| xeroderma pigmentosum group C-complementing protein [Arabidopsis thaliana] gb|AAL32833.1| Unknown protein [Arabidopsis thaliana] gb|AAQ56802.1| At5g16630 [Arabi 2.0e-13
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene47517 SustainPine v3.0 916
AutoFact: Similar to gb|U96710 8-oxoguanine DNA-glycosylase from Homo sapiens [Arabidopsis thaliana] 3.0e-37
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: 8-oxoguanine DNA glycosylase 2.643e-09
C-terminus
sp_v3.0_unigene47949 SustainPine v3.0 672
AutoFact: ClpB [Phaseolus lunatus] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Heat shock protein 101 4.449e-17
Internal
sp_v3.0_unigene52528 SustainPine v3.0 268
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LUS3.1|PP237_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16610 dbj|BAB02752.1| selenium-binding protein-like [Arabidopsis thaliana] gb|AEE75843.1| pentatricope 7.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative pentatricopeptide (PPR) repeat-containing protein 1.189e-14
Internal
sp_v3.0_unigene52931 SustainPine v3.0 296
AutoFact: Heat shock protein 101 n=5 Tax=Vitis RepID=Q3L1D0_VITVI 7.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Heat shock protein 101 3.902e-16
Internal
sp_v3.0_unigene53011 SustainPine v3.0 345
AutoFact: putative DNA repair protein RAD23-1 [Arabidopsis thaliana] gb|AEE36280.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana] 1.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Uv excision repair protein rad23, putative 1.884e-11
Putative Complete
sp_v3.0_unigene53155 SustainPine v3.0 224
AutoFact: 8-oxoguanine DNA glycosylase [Populus nigra] 6.0e-19
FL-Next: tr=N-glycosylase/DNA lyase; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene54649 SustainPine v3.0 239
AutoFact: pfam01535, PPR, PPR repeat 4.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 3.294e-14
Internal
sp_v3.0_unigene55282 SustainPine v3.0 251
AutoFact: 101 kDa heat shock protein n=3 Tax=Solanaceae RepID=Q9ZT13_TOBAC 7.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Heat shock protein 101 2.907e-16
Internal
sp_v3.0_unigene55523 SustainPine v3.0 358
AutoFact: ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic n=3 Tax=core eudicotyledons RepID=CLPAB_SOLLC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Heat shock protein 101 5.287e-16
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain