Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: damaged DNA binding

Term: GO:0003684  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene706 SustainPine v3.0 1767
AutoFact: DNA polymerase kappa subunit [Arabidopsis thaliana] gb|AAS91582.1| DNA-directed polymerase kappa [Arabidopsis thaliana] gb|AEE32503.1| DNA polymerase kappa subunit [Arabidopsis thaliana] 5.0e-22
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene3616 SustainPine v3.0 3663
AutoFact: DNA mismatch repair protein [Petunia x hybrida] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: MutS homolog 7 1.575e-08
Putative Complete
sp_v3.0_unigene3792 SustainPine v3.0 2429
AutoFact: DNA polymerase eta subunit [Arabidopsis thaliana] emb|CAC94893.1| putative DNA polymerase eta [Arabidopsis thaliana] gb|AED95155.1| DNA polymerase eta subunit [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Complete
sp_v3.0_unigene4510 SustainPine v3.0 475
AutoFact: Terminal deoxycytidyl transferase rev1, putative n=1 Tax=Ricinus communis RepID=B9RY76_RICCO 2.0e-33
FL-Next: Isoform 3 of DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 0.0
Internal
sp_v3.0_unigene6159 SustainPine v3.0 1715
AutoFact: DNA repair protein RAD51 homolog n=1 Tax=Solanum lycopersicum RepID=RAD51_SOLLC 0.0
FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
Sma3: DNA repair protein RAD51 homolog 0.0
Complete
sp_v3.0_unigene7812 SustainPine v3.0 2015
AutoFact: 8-oxoguanine DNA glycosylase [Populus nigra] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 8-oxoguanine DNA glycosylase 3.449e-09
Complete
sp_v3.0_unigene8045 SustainPine v3.0 1694
AutoFact: Excision repair cross-complementing 1 ercc1, putative n=1 Tax=Ricinus communis RepID=B9RF25_RICCO 0.0
FL-Next: sp=DNA excision repair protein ERCC-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene8058 SustainPine v3.0 1484
AutoFact: putative formamidopyrimidine-DNA glycosylase 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Putative formamidopyrimidine-DNA glycosylase 1 9.264e-09
N-terminus
sp_v3.0_unigene8359 SustainPine v3.0 1628
AutoFact: DNA mismatch repair protein Msh3 [Arabidopsis thaliana] sp|O65607.2|MSH3_ARATH RecName: Full=DNA mismatch repair protein Msh3; Short=AtMsh3 emb|CAA07684.1| Msh3 protein [Arabidopsis thaliana] gb|AEE85075.1| DNA mismatch repair protein Msh3 [Arabidopsis th 0.0
FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene8644 SustainPine v3.0 921
AutoFact: Cation-transporting atpase plant, putative n=1 Tax=Ricinus communis RepID=B9SH00_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Autoinhibited calcium ATPase 1.214e-22
Internal
sp_v3.0_unigene9022 SustainPine v3.0 2243
AutoFact: N-acetyltransferase [Arabidopsis thaliana] gb|ABU62813.1| cohesion establishment factor 7 [Arabidopsis thaliana] gb|AEE85905.1| N-acetyltransferase [Arabidopsis thaliana] 0.0
FL-Next: tr=cDNA, clone: J065201C14, full insert sequence; Oryza sativa subsp. japonica (Rice). 0.0
Complete
sp_v3.0_unigene9320 SustainPine v3.0 984
AutoFact: Ca2+-transporting ATPase like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Autoinhibited calcium ATPase 2.586e-40
C-terminus
sp_v3.0_unigene10278 SustainPine v3.0 3906
AutoFact: DNA mismatch repair protein MSH6-2, putative n=1 Tax=Ricinus communis RepID=B9RKT8_RICCO 0.0
FL-Next: sp=DNA mismatch repair protein MSH7; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: MutS homolog 7 2.217e-08
Putative Complete
sp_v3.0_unigene10702 SustainPine v3.0 598
AutoFact: Calcium ATPase n=2 Tax=Nicotiana benthamiana RepID=D5JXY5_NICBE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Autoinhibited calcium ATPase 1.534e-40
Internal
sp_v3.0_unigene12617 SustainPine v3.0 896
AutoFact: putative helicase [Arabidopsis thaliana] 2.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: CarD-like transcriptional regulator family protein, expressed 4.361e-09
Complete
sp_v3.0_unigene12839 SustainPine v3.0 932
AutoFact: Autoinhibited calcium ATPase n=1 Tax=Populus trichocarpa RepID=B9H9I2_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Autoinhibited calcium ATPase 3.045e-38
Internal
sp_v3.0_unigene15326 SustainPine v3.0 511
AutoFact: ATP binding / damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis thaliana] dbj|BAE98729.1| DNA repair protein-like [Arabidopsis thaliana] gb|AED95929.1| ATP binding / damaged DNA binding / nucleoside-triphosphatase/ n 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene15839 SustainPine v3.0 1160
AutoFact: putative DEAD/DEAH box helicase [Arabidopsis thaliana] gb|AAF14851.1|AC011664_33 putative helicase [Arabidopsis thaliana] gb|AEE73755.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Sma3: CarD-like transcriptional regulator family protein, expressed 4.755e-09
Putative N-terminus
sp_v3.0_unigene15974 SustainPine v3.0 2560
AutoFact: Autoinhibited calcium ATPase (Fragment) n=1 Tax=Populus trichocarpa RepID=B9IN45_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Autoinhibited calcium ATPase 1.70958e-43
N-terminus
sp_v3.0_unigene17580 SustainPine v3.0 1384
AutoFact: zinc ion binding protein [Arabidopsis thaliana] gb|AEE83354.1| zinc ion binding protein [Arabidopsis thaliana] 9.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain