Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: ribosome biogenesis

Term: GO:0042254  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene199920 SustainPine v3.0 307
AutoFact: PREDICTED: 60S ribosomal protein L7a [Apis mellifera] 2.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L7a, putative 1.408e-08
Putative C-terminus
sp_v3.0_unigene199954 SustainPine v3.0 293
AutoFact: 60S ribosomal protein L7a n=51 Tax=Coelomata RepID=RL7A_TAKRU 6.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene200095 SustainPine v3.0 392
AutoFact: UPI0002068BB3 related cluster n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI0002068BB3 2.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 3.156e-19
Internal
sp_v3.0_unigene200150 SustainPine v3.0 474
AutoFact: ribosome biogenesis protein BMS1 homolog [Danio rerio] 3.0e-30
FL-Next: tr=Uncharacterized protein; Phytophthora ramorum (Sudden oak death agent). 0.0
Internal
sp_v3.0_unigene200513 SustainPine v3.0 371
AutoFact: Ribosomal protein L7a (Fragment) n=1 Tax=Lepidochitona cinerea RepID=E3P7E8_9MOLL 5.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L7a, putative 9.264e-09
N-terminus
sp_v3.0_unigene200559 SustainPine v3.0 363
AutoFact: 60S acidic ribosomal protein P0 n=9 Tax=Endopterygota RepID=E2AZT8_9HYME 3.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 5.172e-08
Putative N-terminus
sp_v3.0_unigene205691 SustainPine v3.0 508
AutoFact: 60S acidic ribosomal protein P0 n=6 Tax=Andropogoneae RepID=RLA0_MAIZE 3.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 4.82e-16
C-terminus
sp_v3.0_unigene206833 SustainPine v3.0 365
AutoFact: MAR-binding protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GBR1_CUCME 6.0e-22
FL-Next: sp=Probable nucleolar protein 5-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene206882 SustainPine v3.0 484
AutoFact: large subunit ribosomal protein L24e [Arabidopsis thaliana] ref|NP_001078059.1| large subunit ribosomal protein L24e [Arabidopsis thaliana] sp|O22165.1|RLP24_ARATH RecName: Full=Probable ribosome biogenesis protein RLP24 gb|AAC31838.1| 60S ribosomal prote 2.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene207352 SustainPine v3.0 288
AutoFact: 60S ribosomal protein L30-like protein n=6 Tax=Oryza sativa RepID=Q5QMX1_ORYSJ 6.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene208803 SustainPine v3.0 190
AutoFact: Probable nucleolar protein 5-2 n=2 Tax=Arabidopsis RepID=NOP5B_ARATH 3.0e-18
FL-Next: sp=Probable nucleolar protein 5-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Nucleolar RNA binding protein 6.195e-09
Internal
sp_v3.0_unigene209353 SustainPine v3.0 294
AutoFact: large subunit ribosomal protein L24e [Arabidopsis thaliana] ref|NP_001078059.1| large subunit ribosomal protein L24e [Arabidopsis thaliana] sp|O22165.1|RLP24_ARATH RecName: Full=Probable ribosome biogenesis protein RLP24 gb|AAC31838.1| 60S ribosomal prote 5.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene209578 SustainPine v3.0 473
AutoFact: large subunit ribosomal protein L24e [Arabidopsis thaliana] ref|NP_001078059.1| large subunit ribosomal protein L24e [Arabidopsis thaliana] sp|O22165.1|RLP24_ARATH RecName: Full=Probable ribosome biogenesis protein RLP24 gb|AAC31838.1| 60S ribosomal prote 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain