Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: ribosome biogenesis

Term: GO:0042254  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene165411 SustainPine v3.0 436
• AutoFact: 60S ribosomal protein L8-B n=4 Tax=Pleosporineae RepID=B2VZ06_PYRTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 9.264e-09
C-terminus
sp_v3.0_unigene166506 SustainPine v3.0 288
• AutoFact: 50S ribosomal protein L7Ae n=3 Tax=Pleosporineae RepID=B2WJB2_PYRTR 1.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NHP2-like protein 1 2.399e-08
N-terminus
sp_v3.0_unigene166923 SustainPine v3.0 458
• AutoFact: 60S ribosomal protein L7a-1 n=4 Tax=Arabidopsis RepID=RL7A1_ARATH 2.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.023e-08
C-terminus
sp_v3.0_unigene174116 SustainPine v3.0 389
• Sma3: Ribosome biogenesis protein tsr1, putative 7.31e-06
coding
sp_v3.0_unigene183084 SustainPine v3.0 517
• AutoFact: Nucleolar protein family A n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9CGX1_9EUKA 3.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: H/ACA ribonucleoprotein complex subunit 2 4.621e-08
Complete
sp_v3.0_unigene186056 SustainPine v3.0 646
• AutoFact: H/ACA ribonucleoprotein complex subunit 2 [Oryza sativa Indica Group] 2.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: H/ACA ribonucleoprotein complex subunit 2 4.621e-08
Putative Complete
sp_v3.0_unigene186089 SustainPine v3.0 681
• AutoFact: Probable ribosome biogenesis protein RLP24 n=20 Tax=Amniota RepID=RLP24_HUMAN 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene186410 SustainPine v3.0 483
• AutoFact: 60S ribosomal protein L7a-2 n=1 Tax=Phytophthora infestans T30-4 RepID=D0MXP8_PHYIT 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.124e-08
N-terminus
sp_v3.0_unigene188396 SustainPine v3.0 549
• AutoFact: ribosomal protein L7A [Bombyx mori] gb|AAV34817.1| ribosomal protein L7A [Bombyx mori] 3.00004e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.032e-08
Putative C-terminus
sp_v3.0_unigene188942 SustainPine v3.0 492
• AutoFact: 60S ribosomal protein L7a [Neosartorya fischeri NRRL 181] gb|EAW16542.1| 60S ribosomal protein L7a [Neosartorya fischeri NRRL 181] 2.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.023e-08
Putative C-terminus
sp_v3.0_unigene189307 SustainPine v3.0 454
• AutoFact: Nucleolar GTP-binding protein, putative n=1 Tax=Ricinus communis RepID=B9RIE0_RICCO 6.0e-15
• FL-Next: sp=Nucleolar GTP-binding protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene189749 SustainPine v3.0 445
• AutoFact: PREDICTED: hoi-polloi-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CBB923 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Putative Complete
sp_v3.0_unigene190067 SustainPine v3.0 623
• AutoFact: ribosomal L24 domain containing 1 [Xenopus laevis] gb|AAH42273.1| MGC53444 protein [Xenopus laevis] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene190562 SustainPine v3.0 421
• AutoFact: PREDICTED: similar to ribosome biogenesis protein tsr1 (20S rrna accumulation protein 1) n=1 Tax=Nasonia vitripennis RepID=UPI00015B516F 6.99949e-42
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
C-terminus
sp_v3.0_unigene192037 SustainPine v3.0 388
• AutoFact: pfam01798, Nop, Putative snoRNA binding domain 1.0e-37
• FL-Next: sp=Probable nucleolar protein 5-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Nucleolar protein nop56, putative 9.733e-12
Internal
sp_v3.0_unigene192071 SustainPine v3.0 437
• AutoFact: 60S acidic ribosomal protein P0 n=1 Tax=Dictyostelium purpureum RepID=F0ZXE3_DICPU 2.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S acidic ribosomal protein P0 2.941e-19
Internal
sp_v3.0_unigene192162 SustainPine v3.0 813
• AutoFact: ribosomal protein L7a [Argopecten irradians] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.514e-08
Complete
sp_v3.0_unigene193264 SustainPine v3.0 489
• AutoFact: 60S acidic ribosomal protein P0 n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NUM6_COPC7 3.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S acidic ribosomal protein P0 3.156e-19
N-terminus
sp_v3.0_unigene193269 SustainPine v3.0 516
• AutoFact: U4/U6 small nuclear ribonucleoprotein SNU13 [Arabidopsis thaliana] gb|AAK82476.1| AT5g20160/F5O24_50 [Arabidopsis thaliana] gb|AAM16174.1| AT5g20160/F5O24_50 [Arabidopsis thaliana] gb|AAM64557.1| ribosomal protein L7Ae-like [Arabidopsis thaliana] gb|AED92 7.00649e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NHP2-like protein 1 2.9e-08
Complete
sp_v3.0_unigene196084 SustainPine v3.0 130
• AutoFact: Unassigned protein
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain