Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: ribosome biogenesis

Term: GO:0042254  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene153270 SustainPine v3.0 383
• AutoFact: H/ACA ribonucleoprotein complex subunit 2 [Oryza sativa Indica Group] 1.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: H/ACA ribonucleoprotein complex subunit 2 4.621e-08
C-terminus
sp_v3.0_unigene153489 SustainPine v3.0 441
• AutoFact: 60S ribosomal protein L7a-2 n=1 Tax=Phytophthora infestans T30-4 RepID=D0MXP8_PHYIT 3.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.023e-08
C-terminus
sp_v3.0_unigene153777 SustainPine v3.0 307
• AutoFact: Ribosomal protein L7a n=1 Tax=Pfiesteria piscicida RepID=E8Z674_PFIPI 1.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.083e-08
Internal
sp_v3.0_unigene153799 SustainPine v3.0 356
• AutoFact: Ribosomal protein L24-like protein n=1 Tax=Polysphondylium pallidum RepID=D3BSM2_POLPA 1.99965e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene153969 SustainPine v3.0 393
• AutoFact: PREDICTED: similar to nucleolar protein family A, member 2 (H/ACA small nucleolar RNPs) n=1 Tax=Ciona intestinalis RepID=UPI00006A7302 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: H/ACA ribonucleoprotein complex subunit 2 4.621e-08
C-terminus
sp_v3.0_unigene154011 SustainPine v3.0 330
• AutoFact: Nucleolar protein NOP5 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NBZ5_PHYIT 0.0
• FL-Next: sp=Probable nucleolar protein 5-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Nucleolar protein nop56, putative 1.201e-11
Internal
sp_v3.0_unigene154238 SustainPine v3.0 239
• AutoFact: Ribosomal protein L7Ae containing protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006D0064 4.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 4.959e-09
Internal
sp_v3.0_unigene154246 SustainPine v3.0 426
• AutoFact: ribosomal protein L7a [Xenopus (Silurana) tropicalis] gb|AAI18909.1| hypothetical protein LOC447981 [Xenopus (Silurana) tropicalis] 5.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.467e-08
C-terminus
sp_v3.0_unigene154477 SustainPine v3.0 275
• AutoFact: Ribosome biogenesis regulatory protein homolog n=1 Tax=Dictyostelium discoideum RepID=RRS1_DICDI 3.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene154780 SustainPine v3.0 219
• AutoFact: H/ACA ribonucleoprotein complex subunit 2 [Oryza sativa Indica Group] 1.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: H/ACA ribonucleoprotein complex subunit 2 4.621e-08
Internal
sp_v3.0_unigene154812 SustainPine v3.0 403
• AutoFact: 60S ribosomal protein L7a [Theileria parva strain Muguga] gb|EAN32369.1| 60S ribosomal protein L7a, putative [Theileria parva] 8.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.186e-08
C-terminus
sp_v3.0_unigene154859 SustainPine v3.0 477
• AutoFact: L10e/P0 n=1 Tax=Suberites domuncula RepID=Q4KTH7_SUBDO 1.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene155023 SustainPine v3.0 349
• AutoFact: Ribosomal protein L24-like protein n=1 Tax=Polysphondylium pallidum RepID=D3BSM2_POLPA 1.99965e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene155385 SustainPine v3.0 352
• AutoFact: Nucleolar protein, small subunit of H/ACA snoRNPs n=3 Tax=Chlamydomonadales RepID=A8JB67_CHLRE 7.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene155498 SustainPine v3.0 366
• AutoFact: ribosomal protein l7ae [Aedes aegypti] ref|XP_001847839.1| 13 kDa ribonucleoprotein-associated protein [Culex quinquefasciatus] gb|ABF18367.1| 60S ribosomal protein 15.5kD/SNU13 [Aedes aegypti] gb|EAT45362.1| ribosomal protein l7ae [Aedes aegypti] gb|EDS2 4.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NHP2-like protein 1 3.279e-08
N-terminus
sp_v3.0_unigene155554 SustainPine v3.0 486
• AutoFact: PREDICTED: similar to Nucleolar protein 5, partial [Ornithorhynchus anatinus] 0.0
• FL-Next: sp=Probable nucleolar protein 5-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Nucleolar protein nop56, putative 1.201e-11
Internal
sp_v3.0_unigene155590 SustainPine v3.0 188
• AutoFact: 60S ribosomal protein L7A (Fragment) n=1 Tax=Cimex lectularius RepID=D1FPH5_CIMLE 3.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene155618 SustainPine v3.0 458
• AutoFact: 60S ribosomal protein L7a-2 [Arabidopsis thaliana] sp|Q9LZH9.1|RL7A2_ARATH RecName: Full=60S ribosomal protein L7a-2 emb|CAB83137.1| 60S RIBOSOMAL PROTEIN L7A protein [Arabidopsis thaliana] gb|AAK97734.1| AT3g62870/F26K9_300 [Arabidopsis thaliana] gb|AAL3 5.99994e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.478e-08
Internal
sp_v3.0_unigene156045 SustainPine v3.0 514
• AutoFact: Nucleolar protein-like protein 5A n=1 Tax=Daphnia pulex RepID=E9H9X9_DAPPU 0.0
• FL-Next: sp=Probable nucleolar protein 5-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Nucleolar protein nop56, putative 1.201e-11
Internal
sp_v3.0_unigene156069 SustainPine v3.0 248
• AutoFact: 60S ribosomal protein L7A, putative n=2 Tax=Sarcocystidae RepID=B9PKF7_TOXGO 1.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.062e-08
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain