Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: ribosome biogenesis

Term: GO:0042254  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene77295 SustainPine v3.0 441
AutoFact: likely cytosolic ribosomal acidic protein P0 [Candida albicans SC5314] ref|XP_888730.1| hypothetical protein CaO19_7015 [Candida albicans SC5314] gb|EAL01462.1| likely cytosolic ribosomal acidic protein P0 [Candida albicans SC5314] dbj|BAE44627.1| hypothe 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 3.156e-19
Internal
sp_v3.0_unigene78989 SustainPine v3.0 176
AutoFact: Ribosome biogenesis protein tsr1 n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8N772_COPC7 6.0e-25
FL-Next: tr=Singapore isolate B (sub-type 7) whole genome shotgun sequence assembly, scaffold_0; Blastocystis hominis. 0.0
Sma3: cDNA clone:J013157I04, full insert sequence 8.285e-06
Internal
sp_v3.0_unigene79049 SustainPine v3.0 208
AutoFact: RL30, ribosomal protein 30 60S large ribosomal subunit n=1 Tax=Thalassiosira pseudonana RepID=B8C0H2_THAPS 2.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene79320 SustainPine v3.0 416
AutoFact: 60S acidic ribosomal protein P0 [Lodderomyces elongisporus NRRL YB-4239] gb|EDK47264.1| 60S acidic ribosomal protein P0 [Lodderomyces elongisporus NRRL YB-4239] 3.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 1.279e-07
C-terminus
sp_v3.0_unigene93015 SustainPine v3.0 221
putative_coding
sp_v3.0_unigene95008 SustainPine v3.0 404
AutoFact: Unassigned protein
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
N-terminus
sp_v3.0_unigene100495 SustainPine v3.0 316
AutoFact: Ribosomal protein L7Ae-like [Arabidopsis thaliana] 1.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene115921 SustainPine v3.0 551
AutoFact: 60S acidic ribosomal protein P0 n=1 Tax=Postia placenta Mad-698-R RepID=B8NZ89_POSPM 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 2.689e-19
N-terminus
sp_v3.0_unigene127562 SustainPine v3.0 689
AutoFact: ribosome biogenesis regulatory protein-like protein [Arabidopsis thaliana] sp|Q9SH88.2|RRS1_ARATH RecName: Full=Ribosome biogenesis regulatory protein homolog dbj|BAE98464.1| hypothetical protein [Arabidopsis thaliana] gb|AEC09475.1| ribosome biogenesis r 2.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene128240 SustainPine v3.0 504
AutoFact: MAR-binding protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GBR1_CUCME 1.4013e-45
FL-Next: sp=Probable nucleolar protein 5-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Nucleolar RNA binding protein 5.817e-09
Internal
sp_v3.0_unigene136429 SustainPine v3.0 248
AutoFact: Ribosomal protein L10 containing protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2QYV8_ORYSJ 3.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene140866 SustainPine v3.0 612
AutoFact: RecName: Full=60S acidic ribosomal protein P0 gb|AAB63814.1| acidic ribosomal protein P0 [Glycine max] 9.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 1.039e-19
N-terminus
sp_v3.0_unigene142277 SustainPine v3.0 1144
AutoFact: 60S acidic ribosomal protein P0 n=4 Tax=Papilionoideae RepID=RLA0_SOYBN 5.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 4.646e-19
Misassembled
sp_v3.0_unigene142689 SustainPine v3.0 603
AutoFact: 60S ribosomal protein L7a n=11 Tax=Poaceae RepID=RL7A_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L7a, putative 1.42e-08
N-terminus
sp_v3.0_unigene142868 SustainPine v3.0 296
AutoFact: 60S ribosomal protein l7a [Oryza sativa Indica Group] 1.0e-18
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Sma3: 60S ribosomal protein L7a, putative 7.149e-09
Internal
sp_v3.0_unigene142889 SustainPine v3.0 308
AutoFact: 60S ribosomal protein l7a [Oryza sativa Indica Group] 4.00001e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L7a, putative 1.062e-08
Internal
sp_v3.0_unigene145172 SustainPine v3.0 597
AutoFact: large subunit ribosomal protein L24e [Arabidopsis thaliana] ref|NP_001078059.1| large subunit ribosomal protein L24e [Arabidopsis thaliana] sp|O22165.1|RLP24_ARATH RecName: Full=Probable ribosome biogenesis protein RLP24 gb|AAC31838.1| 60S ribosomal prote 5.99994e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene146019 SustainPine v3.0 217
AutoFact: Ribosomal_60s multi-domain protein 2.0e-15
Sma3: 60S acidic ribosomal protein P1, putative 5.124e-08
coding
sp_v3.0_unigene149457 SustainPine v3.0 365
AutoFact: large subunit ribosomal protein L24e [Arabidopsis thaliana] ref|NP_001078059.1| large subunit ribosomal protein L24e [Arabidopsis thaliana] sp|O22165.1|RLP24_ARATH RecName: Full=Probable ribosome biogenesis protein RLP24 gb|AAC31838.1| 60S ribosomal prote 2.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene150324 SustainPine v3.0 389
AutoFact: Ribosomal protein L7Ae-like [Arabidopsis thaliana] 2.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: NHP2-like protein 1 3.279e-08
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain