Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: ribosome biogenesis

Term: GO:0042254  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene37837 SustainPine v3.0 1255
• AutoFact: ribosomal protein L7Ae-like [Brassica rapa] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene38609 SustainPine v3.0 1914
• AutoFact: Integrase, catalytic region; Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HW89_MEDTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene39639 SustainPine v3.0 189
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene42372 SustainPine v3.0 623
• AutoFact: Unassigned protein
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
N-terminus
sp_v3.0_unigene51451 SustainPine v3.0 699
• AutoFact: Ribosomal protein L7A (Fragment) n=1 Tax=Bigelowiella natans RepID=Q3SAE2_BIGNA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.295e-08
N-terminus
sp_v3.0_unigene52737 SustainPine v3.0 161
• AutoFact: 60S ribosomal protein L7a-2 [Arabidopsis thaliana] sp|Q9LZH9.1|RL7A2_ARATH RecName: Full=60S ribosomal protein L7a-2 emb|CAB83137.1| 60S RIBOSOMAL PROTEIN L7A protein [Arabidopsis thaliana] gb|AAK97734.1| AT3g62870/F26K9_300 [Arabidopsis thaliana] gb|AAL3 2.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 5.967e-09
Internal
sp_v3.0_unigene54957 SustainPine v3.0 235
• AutoFact: 60S acidic ribosomal protein P0 n=1 Tax=Caligus clemensi RepID=C1C0H6_9MAXI 2.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S acidic ribosomal protein P0 1.862e-12
Internal
sp_v3.0_unigene57096 SustainPine v3.0 120
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_19.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TMM1_VITVI 4.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene57391 SustainPine v3.0 255
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene60843 SustainPine v3.0 164
• AutoFact: MAR-binding protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GBR1_CUCME 4.0e-11
• FL-Next: sp=Probable nucleolar protein 5-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: MAR-binding protein 1.657e-08
Internal
sp_v3.0_unigene66072 SustainPine v3.0 478
• AutoFact: Integrase, catalytic region; Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HW89_MEDTR 2.0e-24
• FL-Next: tr=Integrase, catalytic region; Ribonuclease H; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene69939 SustainPine v3.0 292
• AutoFact: Unassigned protein 6.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene70216 SustainPine v3.0 278
• AutoFact: ATP-binding cassette transporter n=2 Tax=Selaginella moellendorffii RepID=D8RHS6_SELML 2.0e-13
• FL-Next: sp=ABC transporter G family member 12; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: White-brown-complex ABC transporter family 9.628e-27
Internal
sp_v3.0_unigene73913 SustainPine v3.0 284
• AutoFact: 60S ribosomal protein L7A n=6 Tax=Ajellomyces RepID=C0NHA4_AJECG 1.00053e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.003e-08
Internal
sp_v3.0_unigene74633 SustainPine v3.0 228
• AutoFact: large subunit ribosomal protein L24e [Arabidopsis thaliana] ref|NP_001078059.1| large subunit ribosomal protein L24e [Arabidopsis thaliana] sp|O22165.1|RLP24_ARATH RecName: Full=Probable ribosome biogenesis protein RLP24 gb|AAC31838.1| 60S ribosomal prote 2.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene75050 SustainPine v3.0 98
• AutoFact: Ribosomal protein L4 n=2 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NNV8_COPC7 2.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 2.9e-09
Internal
sp_v3.0_unigene75185 SustainPine v3.0 156
• AutoFact: ribosomal protein L7Ae-like [Brassica rapa] 4.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NHP2-like protein 1 1.818e-08
Putative N-terminus
sp_v3.0_unigene75799 SustainPine v3.0 281
• AutoFact: 60S ribosomal protein L30-like protein n=6 Tax=Oryza sativa RepID=Q5QMX1_ORYSJ 2.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene76472 SustainPine v3.0 313
• AutoFact: Ribosomal protein L7a (Fragment) n=1 Tax=Lepidochitona cinerea RepID=E3P7E8_9MOLL 2.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene76606 SustainPine v3.0 303
• AutoFact: Ribosomal protein S6, putative n=1 Tax=Trypanosoma cruzi RepID=E7LLY0_TRYCR 2.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NHP2-like protein 1 3.279e-08
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain