Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: ribosome biogenesis

Term: GO:0042254  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene24099 SustainPine v3.0 588
• AutoFact: 60S ribosomal protein L7a-2 n=1 Tax=Phytophthora infestans T30-4 RepID=D0MXP8_PHYIT 6.99949e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.317e-08
C-terminus
sp_v3.0_unigene24758 SustainPine v3.0 1602
• AutoFact: RecName: Full=60S acidic ribosomal protein P0 gb|AAB63814.1| acidic ribosomal protein P0 [Glycine max] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S acidic ribosomal protein P0 8.661e-19
Complete
sp_v3.0_unigene25659 SustainPine v3.0 887
• AutoFact: 60S ribosomal protein L7a n=51 Tax=Coelomata RepID=RL7A_TAKRU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.144e-08
Complete
sp_v3.0_unigene25827 SustainPine v3.0 475
• AutoFact: 13 kDa ribonucleoprotein-associated protein n=2 Tax=Oomycetes RepID=D0NZI7_PHYIT 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NHP2-like protein 1 3.86e-08
Complete
sp_v3.0_unigene25983 SustainPine v3.0 484
• AutoFact: 60S ribosomal protein L7a [Neosartorya fischeri NRRL 181] gb|EAW16542.1| 60S ribosomal protein L7a [Neosartorya fischeri NRRL 181] 2.00386e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.083e-08
C-terminus
sp_v3.0_unigene26278 SustainPine v3.0 586
• AutoFact: 60S ribosomal protein L7a-2 n=1 Tax=Phytophthora infestans T30-4 RepID=D0MXP8_PHYIT 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.514e-08
Internal
sp_v3.0_unigene26839 SustainPine v3.0 1310
• AutoFact: Ribosomal protein L10 [Medicago truncatula] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene27862 SustainPine v3.0 515
• AutoFact: Ribosomal protein L7Ae/L30e/S12e/Gadd4, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0P0D1_PHYIT 7.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: H/ACA ribonucleoprotein complex subunit 2 4.621e-08
Complete
sp_v3.0_unigene29946 SustainPine v3.0 1365
• AutoFact: ribosomal protein L7Ae-like [Brassica rapa] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene29975 SustainPine v3.0 1153
• AutoFact: 50S ribosomal protein L10, putative n=1 Tax=Ricinus communis RepID=B9RY97_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene30317 SustainPine v3.0 1104
• AutoFact: large subunit ribosomal protein L24e [Arabidopsis thaliana] ref|NP_001078059.1| large subunit ribosomal protein L24e [Arabidopsis thaliana] sp|O22165.1|RLP24_ARATH RecName: Full=Probable ribosome biogenesis protein RLP24 gb|AAC31838.1| 60S ribosomal prote 2.8026e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene31488 SustainPine v3.0 386
• AutoFact: Ribosomal protein L7Ae containing protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006D0064 2.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 9.548e-09
N-terminus
sp_v3.0_unigene31566 SustainPine v3.0 488
• AutoFact: Chain A, Structure Of A Human Prp31-15.5k-U4 Snrna Complex pdb|2OZB|D Chain D, Structure Of A Human Prp31-15.5k-U4 Snrna Complex 5.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NHP2-like protein 1 3.279e-08
Complete
sp_v3.0_unigene34821 SustainPine v3.0 1815
• AutoFact: MAR-binding protein [Nicotiana tabacum] 0.0
• FL-Next: sp=Probable nucleolar protein 5-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Nucleolar protein nop56, putative 1.366e-11
N-terminus
sp_v3.0_unigene34901 SustainPine v3.0 436
• AutoFact: 60S ribosomal protein l7a [Oryza sativa Indica Group] 2.94273e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.42e-08
C-terminus
sp_v3.0_unigene35523 SustainPine v3.0 1000
• AutoFact: ribosomal protein L7Ae-like [Brassica rapa] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene35894 SustainPine v3.0 683
• AutoFact: 60S ribosomal protein L7a-2 [Arabidopsis thaliana] sp|Q9LZH9.1|RL7A2_ARATH RecName: Full=60S ribosomal protein L7a-2 emb|CAB83137.1| 60S RIBOSOMAL PROTEIN L7A protein [Arabidopsis thaliana] gb|AAK97734.1| AT3g62870/F26K9_300 [Arabidopsis thaliana] gb|AAL3 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.144e-08
C-terminus
sp_v3.0_unigene36603 SustainPine v3.0 657
• AutoFact: 60S ribosomal protein l7a [Oryza sativa Indica Group] 2.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.362e-08
Putative C-terminus
sp_v3.0_unigene37717 SustainPine v3.0 480
• AutoFact: RecName: Full=60S acidic ribosomal protein P0 gb|AAB63814.1| acidic ribosomal protein P0 [Glycine max] 5.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S acidic ribosomal protein P0 3.719e-15
Misassembled
sp_v3.0_unigene37823 SustainPine v3.0 3023
• AutoFact: Nucleolar protein nop56, putative n=1 Tax=Ricinus communis RepID=B9RAI8_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nucleolar protein 2.839e-10
Complete

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain