Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: ribonucleoprotein complex

Term: GO:0030529  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene27162 SustainPine v3.0 449
• AutoFact: U6 snRNA-associated Sm-like protein LSm8 n=6 Tax=Apocrita RepID=E2BNJ0_9HYME 1.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene27309 SustainPine v3.0 299
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene27369 SustainPine v3.0 1765
• AutoFact: Putative RRM-containing protein SEB-4 n=3 Tax=Poaceae RepID=Q5N8W4_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-binding region-containing protein, putative 4.018e-15
Complete
sp_v3.0_unigene27862 SustainPine v3.0 515
• AutoFact: Ribosomal protein L7Ae/L30e/S12e/Gadd4, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0P0D1_PHYIT 7.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: H/ACA ribonucleoprotein complex subunit 2 4.621e-08
Complete
sp_v3.0_unigene28451 SustainPine v3.0 1889
• AutoFact: BP28CT domain containing protein 1.0e-36
• FL-Next: sp=Uncharacterized protein At3g06530; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene29152 SustainPine v3.0 980
• AutoFact: CRS2-associated factor 2 [Arabidopsis thaliana] sp|Q9LDA9.1|CAF2P_ARATH RecName: Full=CRS2-associated factor 2, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2; Flags: Precursor gb|AAF79596.1|AC007 0.0
• FL-Next: sp=CRS2-associated factor 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2 8.321e-13
N-terminus
sp_v3.0_unigene29197 SustainPine v3.0 659
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 2.0e-31
• FL-Next: tr=Putative uncharacterized protein; Volvox carteri (Green alga). 0.0
Complete
sp_v3.0_unigene29772 SustainPine v3.0 1262
• AutoFact: Peptidyl-tRNA hydrolase [Arabidopsis thaliana] sp|Q6NLS8.1|PTHM_ARATH RecName: Full=Peptidyl-tRNA hydrolase, mitochondrial; AltName: Full=M-PTH; AltName: Full=Mitochondrial CRS2-like protein; AltName: Full=Mitochondrial RNA splicing factor; Flags: Precurs 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Peptidyl-tRNA hydrolase, putative 9.112e-12
Complete
sp_v3.0_unigene29946 SustainPine v3.0 1365
• AutoFact: ribosomal protein L7Ae-like [Brassica rapa] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene31486 SustainPine v3.0 599
• AutoFact: LSM domain-containing protein n=1 Tax=Glomerella graminicola M1.001 RepID=E3QQL9_COLGM 6.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene31488 SustainPine v3.0 386
• AutoFact: Ribosomal protein L7Ae containing protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006D0064 2.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 9.548e-09
N-terminus
sp_v3.0_unigene31566 SustainPine v3.0 488
• AutoFact: Chain A, Structure Of A Human Prp31-15.5k-U4 Snrna Complex pdb|2OZB|D Chain D, Structure Of A Human Prp31-15.5k-U4 Snrna Complex 5.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NHP2-like protein 1 3.279e-08
Complete
sp_v3.0_unigene31648 SustainPine v3.0 484
• AutoFact: PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like isoform 1 [Apis mellifera] 2.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein sm d2, putative 4.755e-09
Complete
sp_v3.0_unigene33166 SustainPine v3.0 904
• AutoFact: small nuclear ribonucleoprotein F [Arabidopsis thaliana] ref|XP_002867361.1| hypothetical protein ARALYDRAFT_913456 [Arabidopsis lyrata subsp. lyrata] ref|XP_002885912.1| hypothetical protein ARALYDRAFT_899645 [Arabidopsis lyrata subsp. lyrata] sp|Q9SUM2. 4.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein f, putative 7.34e-09
Complete
sp_v3.0_unigene33698 SustainPine v3.0 674
• AutoFact: Small nuclear ribonucleoprotein polypeptide G (Fragment) n=1 Tax=Hyacinthus orientalis RepID=Q677D4_HYAOR 2.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein polypeptide G 4.479e-13
Complete
sp_v3.0_unigene34112 SustainPine v3.0 1222
• AutoFact: putative U1 snRNP 70K protein [Trifolium pratense] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U1 small nuclear ribonucleoprotein 2.567e-12
N-terminus
sp_v3.0_unigene34165 SustainPine v3.0 1001
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAB03120.1| unnamed protein product [Arabidopsis thaliana] gb|AAL85976.1| unknown protein [Arabidopsis thaliana] gb|AAM67536.1| unknown protein [Arabidopsis thaliana] dbj|BAD94504.1| hypo 3.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein At3g13224 1.144e-08
C-terminus
sp_v3.0_unigene34279 SustainPine v3.0 699
• AutoFact: Nucleolar RNA-binding Nop10p-like protein n=1 Tax=Wolffia arrhiza RepID=D2XQX9_WOLAR 1.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: H/ACA ribonucleoprotein complex subunit 3-like protein 5.586e-09
Complete
sp_v3.0_unigene34447 SustainPine v3.0 482
• AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S651_RICCO 6.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene34778 SustainPine v3.0 578
• AutoFact: Nucleolar RNA-binding Nop10p-like protein n=1 Tax=Wolffia arrhiza RepID=D2XQX9_WOLAR 1.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: H/ACA ribonucleoprotein complex subunit 3-like protein 5.586e-09
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain