Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: thylakoid

Term: GO:0009579  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene4373 SustainPine v3.0 407
AutoFact: Translationally-controlled tumor protein homolog n=4 Tax=Pinaceae RepID=TCTP_PSEMZ 1.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Translationally-controlled tumor protein homolog 0.0
C-terminus
sp_v3.0_unigene4405 SustainPine v3.0 643
AutoFact: chlorophyll a/b-binding protein [Picea glauca] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: LHCP 2.843e-21
Complete
sp_v3.0_unigene4518 SustainPine v3.0 2381
AutoFact: cell division protease ftsH-12 [Arabidopsis thaliana] sp|Q9SAJ3.2|FTSHC_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 12, chloroplastic; Short=AtFTSH12; Flags: Precursor dbj|BAH20273.1| AT1G79560 [Arabidopsis thaliana] gb|AEE36264.1| cell di 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene4520 SustainPine v3.0 350
AutoFact: Photosystem I assembly protein ycf3 n=1 Tax=Pinus thunbergii RepID=C3VYX2_PINTH 4.00001e-40
FL-Next: sp=Photosystem I assembly protein ycf3; Pinus arizonica. Plastid; Chloroplast. 0.0
Sma3: Photosystem I assembly protein ycf3 0.0
N-terminus
sp_v3.0_unigene4670 SustainPine v3.0 831
AutoFact: Carotenoid cleavage dioxygenase 4a n=1 Tax=Citrus clementina RepID=A0SE35_9ROSI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative 9-cis-epoxycarotenoid dioxygenase 2.733e-22
Putative N-terminus
sp_v3.0_unigene4674 SustainPine v3.0 321
AutoFact: Putative beta-glucosidase [Oryza sativa Japonica Group] 1.00053e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Beta-glucosidase, putative 1.822e-34
Putative C-terminus
sp_v3.0_unigene4874 SustainPine v3.0 718
AutoFact: cyclic nucleotide gated channel [Arabidopsis thaliana] sp|Q9LD37.1|CNG20_ARATH RecName: Full=Probable cyclic nucleotide-gated ion channel 20, chloroplastic; AltName: Full=Cyclic nucleotide-binding transporter 1; Flags: Precursor gb|AAF73128.1|AF148541_1 c 0.0
FL-Next: sp=Probable cyclic nucleotide-gated ion channel 20, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromosome undetermined scaffold_109, whole genome shotgun sequence 6.109e-06
Internal
sp_v3.0_unigene4885 SustainPine v3.0 341
AutoFact: Chlorophyll a-b binding protein 151, chloroplastic n=18 Tax=Magnoliophyta RepID=CB21_GOSHI 1.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: LHCP 1.65e-11
C-terminus
sp_v3.0_unigene4949 SustainPine v3.0 589
AutoFact: putative cyclic nucleotide-regulated ion channel [Oryza sativa Japonica Group] dbj|BAD35887.1| putative cyclic nucleotide-regulated ion channel [Oryza sativa Japonica Group] 1.4013e-45
FL-Next: sp=Probable cyclic nucleotide-gated ion channel 20, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene5073 SustainPine v3.0 391
AutoFact: Ribulose bisphosphate carboxylase small chain n=1 Tax=Picea sitchensis RepID=C0PPY1_PICSI 2.0e-17
FL-Next: sp=Ribulose bisphosphate carboxylase small chain; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribulose bisphosphate carboxylase small chain 0.0
C-terminus
sp_v3.0_unigene5292 SustainPine v3.0 2057
AutoFact: protein kinase family protein [Arabidopsis thaliana] sp|Q9LZV4.1|STN8_ARATH RecName: Full=Serine/threonine-protein kinase STN8, chloroplastic; AltName: Full=Protein STATE TRANSITION 8; Flags: Precursor emb|CAB82762.1| putative protein [Arabidopsis thalian 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene5486 SustainPine v3.0 1623
AutoFact: putative clathrin binding protein (epsin) [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene6230 SustainPine v3.0 2402
AutoFact: Peroxiredoxin, putative n=1 Tax=Ricinus communis RepID=B9SRG0_RICCO 6.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Peroxiredoxin 1.012e-06
Putative Complete
sp_v3.0_unigene6274 SustainPine v3.0 1545
AutoFact: 70 kDa heat shock protein n=5 Tax=BEP clade RepID=Q10SR3_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Heat shock protein 70 0.0
C-terminus
sp_v3.0_unigene6341 SustainPine v3.0 1682
AutoFact: Transketolase, putative n=1 Tax=Ricinus communis RepID=B9T0B2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transketolase 0.0
Internal
sp_v3.0_unigene6459 SustainPine v3.0 1046
AutoFact: violaxanthin de-epoxidase [Zingiber officinale] 0.0
FL-Next: sp=Violaxanthin de-epoxidase, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Violaxanthin de-epoxidase 1.4013e-45
C-terminus
sp_v3.0_unigene7581 SustainPine v3.0 1232
AutoFact: putative calcium-activated outward-rectifying potassium channel 6 [Arabidopsis thaliana] sp|Q9SVV6.1|KCO6_ARATH RecName: Full=Probable calcium-activated outward-rectifying potassium channel 6; Short=AtKCO6 emb|CAB53657.1| potassium channel-like protein [A 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Outward rectifying potassium channel 1.183e-31
C-terminus
sp_v3.0_unigene7650 SustainPine v3.0 1275
AutoFact: Zinc/iron transporter, putative n=1 Tax=Ricinus communis RepID=B9SP03_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ZIP transporter 1.689e-31
Complete
sp_v3.0_unigene7654 SustainPine v3.0 1499
AutoFact: Superoxide dismutase n=1 Tax=Ginkgo biloba RepID=B8YNX9_GINBI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Superoxide dismutase 0.0
Complete
sp_v3.0_unigene7659 SustainPine v3.0 1030
AutoFact: Cyclic nucleotide gated channel n=1 Tax=Malus x domestica RepID=A9CRE4_MALDO 0.0
FL-Next: sp=Probable cyclic nucleotide-gated ion channel 20, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Cyclic nucleotide-gated ion channel, putative 8.316e-27
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain