Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: thylakoid

Term: GO:0009579  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene39351 SustainPine v3.0 180
• AutoFact: Os02g0773400 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q6ZHE3_ORYSJ 9.0e-16
• FL-Next: sp=Probable cyclic nucleotide-gated ion channel 20, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene40217 SustainPine v3.0 405
• AutoFact: Putative beta-glucosidase [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Beta-glucosidase, putative 2.224e-40
Internal
sp_v3.0_unigene40503 SustainPine v3.0 1206
• AutoFact: DUF659 domain containing protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA binding protein, putative 2.109e-08
Putative Complete
sp_v3.0_unigene41009 SustainPine v3.0 398
• AutoFact: DUF659 domain containing protein 8.0e-32
• FL-Next: tr=Putative uncharacterized protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene41190 SustainPine v3.0 161
• AutoFact: putative transketolase [Oryza sativa Japonica Group] 2.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: TK 1.111e-11
Internal
sp_v3.0_unigene42293 SustainPine v3.0 763
• AutoFact: chloroplast processing peptidase [Arabidopsis thaliana] sp|Q8H0W1.2|PLSP1_ARATH RecName: Full=Chloroplast processing peptidase; AltName: Full=Signal peptidase I-3; Flags: Precursor gb|AAU05529.1| At1g05140 [Arabidopsis thaliana] gb|AEE76927.1| chloroplast 6.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Signal peptidase I, putative 1.153e-11
Internal
sp_v3.0_unigene42294 SustainPine v3.0 1039
• AutoFact: chloroplast processing peptidase [Arabidopsis thaliana] sp|Q8H0W1.2|PLSP1_ARATH RecName: Full=Chloroplast processing peptidase; AltName: Full=Signal peptidase I-3; Flags: Precursor gb|AAU05529.1| At1g05140 [Arabidopsis thaliana] gb|AEE76927.1| chloroplast 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Signal peptidase I, putative 1.884e-11
C-terminus
sp_v3.0_unigene42359 SustainPine v3.0 1614
• AutoFact: Heat shock protein 70 (Fragment) n=1 Tax=Picea glauca RepID=Q40846_PICGL 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Heat shock protein 70 1.079e-41
Putative C-terminus
sp_v3.0_unigene42928 SustainPine v3.0 289
• AutoFact: Metal transport protein n=2 Tax=Medicago truncatula RepID=Q6VM19_MEDTR 1.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ZIP transporter 7.138e-26
C-terminus
sp_v3.0_unigene43877 SustainPine v3.0 140
• AutoFact: Protein translocase subunit secA n=1 Tax=Arabidopsis thaliana RepID=Q9XI14_ARATH 2.0e-14
• FL-Next: Isoform 2 of Protein translocase subunit SECA2, chloroplastic OS=Arabidopsis thaliana GN=SECA2 0.0
• Sma3: Protein translocase subunit secA 5.418e-29
Internal
sp_v3.0_unigene44366 SustainPine v3.0 702
• AutoFact: ATP-dependent metalloprotease FtsH [Prosthecochloris aestuarii DSM 271] gb|ACF46797.1| ATP-dependent metalloprotease FtsH [Prosthecochloris aestuarii DSM 271] 6.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: FtsH6-Zea mays FtsH protease 1.576e-07
Internal
sp_v3.0_unigene44404 SustainPine v3.0 922
• AutoFact: pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase 3.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Quinone oxidoreductase-like protein 5.73e-07
C-terminus
sp_v3.0_unigene45856 SustainPine v3.0 128
• AutoFact: Protein translocase subunit secA n=3 Tax=Poaceae RepID=Q657P0_ORYSJ 4.0e-13
• FL-Next: sp=Protein translocase subunit SecA, chloroplastic; Spinacia oleracea (Spinach). 0.0
• Sma3: Protein translocase subunit secA 0.0
Internal
sp_v3.0_unigene46008 SustainPine v3.0 1160
• AutoFact: putative peroxiredoxin protein [Arabidopsis thaliana] 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Peroxiredoxin 1.662e-15
C-terminus
sp_v3.0_unigene46111 SustainPine v3.0 348
• AutoFact: Transketolase, putative n=1 Tax=Ricinus communis RepID=B9T0B2_RICCO 6.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: TK 2.465e-22
Internal
sp_v3.0_unigene46201 SustainPine v3.0 417
• AutoFact: Protein dimerization, putative n=1 Tax=Ricinus communis RepID=B9SWK8_RICCO 2.0e-21
• FL-Next: tr=Protein dimerization, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene46425 SustainPine v3.0 197
• AutoFact: DUF659 domain containing protein 5.0e-24
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene47119 SustainPine v3.0 1316
• AutoFact: Double Clp-N motif protein [Arabidopsis thaliana] gb|AAK59640.1| unknown protein [Arabidopsis thaliana] gb|AAL15176.1| unknown protein [Arabidopsis thaliana] gb|AAM63872.1| unknown [Arabidopsis thaliana] gb|ACG24236.1| ATP-dependent Clp protease ATP-bindi 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-dependent Clp protease ATP-binding subunit clpA 1.228e-13
Complete
sp_v3.0_unigene47648 SustainPine v3.0 177
• AutoFact: Os02g0773400 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q6ZHE3_ORYSJ 5.0e-07
• FL-Next: sp=Putative cyclic nucleotide-gated ion channel 19; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene47859 SustainPine v3.0 819
• AutoFact: putative transketolase [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: TK 4.965e-22
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain