Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: rRNA binding

Term: GO:0019843  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene102258 SustainPine v3.0 963
• AutoFact: 60S ribosomal protein L12 [Capsicum annuum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L12 7.708e-19
Complete
sp_v3.0_unigene107346 SustainPine v3.0 679
• AutoFact: 40S ribosomal protein S9 n=2 Tax=Rhizoctonia solani RepID=A5X2M3_THACU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 1.82169e-44
Complete
sp_v3.0_unigene110369 SustainPine v3.0 179
• AutoFact: H/ACA ribonucleoprotein complex subunit 1-like protein 1 n=5 Tax=Andropogoneae RepID=B6TFJ5_MAIZE 1.0e-13
• FL-Next: sp=Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: H/ACA ribonucleoprotein complex subunit 1-like protein 1 6.229e-09
Internal
sp_v3.0_unigene126863 SustainPine v3.0 733
• AutoFact: 60S ribosomal protein L12 [Capsicum annuum] 7.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L12 7.708e-19
C-terminus
sp_v3.0_unigene129021 SustainPine v3.0 500
• AutoFact: 60S ribosomal protein L23A n=1 Tax=Fritillaria agrestis RepID=RL23A_FRIAG 5.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L23a 2.412e-10
N-terminus
sp_v3.0_unigene132400 SustainPine v3.0 737
• AutoFact: 50S ribosomal protein l3 n=1 Tax=Cucumis melo subsp. melo RepID=E5GC40_CUCME 4.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene137382 SustainPine v3.0 362
• AutoFact: 60S ribosomal protein L12 [Capsicum annuum] 4.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L12 5.202e-15
C-terminus
sp_v3.0_unigene138217 SustainPine v3.0 132
• AutoFact: 30S ribosomal protein S12, chloroplastic n=40 Tax=Coniferales RepID=RR12_PINTH 2.0e-11
• FL-Next: sp=30S ribosomal protein S12, chloroplastic; Pinus amamiana. Plastid; Chloroplast. 0.0
• Sma3: Ribosomal protein S12 1.91e-11
N-terminus
sp_v3.0_unigene138740 SustainPine v3.0 235
• AutoFact: putative ribosomal protein S5 [Oryza sativa Japonica Group] 3.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein S5 containing protein, expressed 9.077e-09
C-terminus
sp_v3.0_unigene140444 SustainPine v3.0 699
• AutoFact: 40S ribosomal protein S18 [Arabidopsis thaliana] ref|NP_192718.1| 40S ribosomal protein S18 [Arabidopsis thaliana] ref|NP_564434.1| 40S ribosomal protein S18 [Arabidopsis thaliana] ref|XP_002872461.1| hypothetical protein ARALYDRAFT_489832 [Arabidopsis ly 8.99999e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S18 8.064e-12
Complete
sp_v3.0_unigene140791 SustainPine v3.0 667
• AutoFact: 60S ribosomal protein L12 [Capsicum annuum] 1.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L12 3.087e-11
C-terminus
sp_v3.0_unigene141876 SustainPine v3.0 516
• AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 5.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 2.11302e-41
Putative C-terminus
sp_v3.0_unigene142008 SustainPine v3.0 359
• AutoFact: Probable fibrillarin (Fragment) n=2 Tax=Picea RepID=O65058_PICMA 2.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fibrillarin, putative 6.336e-08
Putative N-terminus
sp_v3.0_unigene143648 SustainPine v3.0 252
• AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 4.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 7.05e-17
Internal
sp_v3.0_unigene144141 SustainPine v3.0 404
• AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 3.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 2.75201e-41
Putative C-terminus
sp_v3.0_unigene144244 SustainPine v3.0 632
• AutoFact: 40S ribosomal protein S4-3 [Arabidopsis thaliana] sp|Q8VYK6.2|RS43_ARATH RecName: Full=40S ribosomal protein S4-3 gb|AAL16117.1|AF428285_1 AT5g58420/mqj2_10 [Arabidopsis thaliana] gb|AAM64284.1| ribosomal protein S4-like [Arabidopsis thaliana] gb|AED97051 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 4.052e-24
C-terminus
sp_v3.0_unigene144924 SustainPine v3.0 484
• AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Putative N-terminus
sp_v3.0_unigene145052 SustainPine v3.0 317
• AutoFact: Ribosomal protein S18-like n=1 Tax=Oryza sativa Japonica Group RepID=Q8H583_ORYSJ 9.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S18 7.209e-12
N-terminus
sp_v3.0_unigene145113 SustainPine v3.0 264
• AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 6.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 2.66247e-44
Putative C-terminus
sp_v3.0_unigene147965 SustainPine v3.0 533
• AutoFact: Ribosomal protein L37 n=1 Tax=Picea sitchensis RepID=A9NJS5_PICSI 4.0e-21
• FL-Next: sp=Ribosomal protein L37; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L37 0.0
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain