Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: AT hook, DNA-binding motif

Term: IPR017956  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene88 SustainPine v3.0 1025
• AutoFact: Putative histone H1 n=1 Tax=Cryptomeria japonica RepID=Q1XG59_CRYJA 4.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone H1 0.0
Complete
sp_v3.0_unigene179 SustainPine v3.0 2001
• AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9STJ6_RICCO 2.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-binding protein-like 8.063e-23
Complete
sp_v3.0_unigene213 SustainPine v3.0 2682
• AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RYZ7_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ankyrin protein kinase-like 5.209e-18
Complete
sp_v3.0_unigene252 SustainPine v3.0 1729
• AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9HEW0_POPTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromatin remodeling complex subunit 2.211e-18
Complete
sp_v3.0_unigene267 SustainPine v3.0 1747
• AutoFact: Unassigned protein
• FL-Next: sp=DNA mismatch repair protein MSH6; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene340 SustainPine v3.0 5840
• AutoFact: [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromatin remodeling complex subunit 2.792e-14
Putative Complete
sp_v3.0_unigene408 SustainPine v3.0 725
• AutoFact: DUF296 domain containing protein 3.0e-06
• Sma3: ESC, putative 2.502e-08
coding
sp_v3.0_unigene428 SustainPine v3.0 2732
• AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RYZ7_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP binding protein, putative 5.152e-24
Complete
sp_v3.0_unigene474 SustainPine v3.0 3761
• AutoFact: AF-4 multi-domain protein 5.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome undetermined scaffold_69, whole genome shotgun sequence 2.345e-06
Complete
sp_v3.0_unigene878 SustainPine v3.0 1323
• AutoFact: DEMETER protein [Arabidopsis thaliana] 0.0
• FL-Next: sp=Transcriptional activator DEMETER; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Repressor of silencing 1 6.505e-09
C-terminus
sp_v3.0_unigene983 SustainPine v3.0 3457
• AutoFact: Set domain protein, putative n=1 Tax=Ricinus communis RepID=B9R8W9_RICCO 0.0
• FL-Next: sp=Histone-lysine N-methyltransferase ATX2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: SET domain protein 1.535e-15
Putative Complete
sp_v3.0_unigene1629 SustainPine v3.0 3502
• AutoFact: methyl-CPG-binding domain 8 [Arabidopsis thaliana] gb|AAL86338.1| unknown protein [Arabidopsis thaliana] gb|AAM91660.1| unknown protein [Arabidopsis thaliana] gb|AEE30228.1| methyl-CPG-binding domain 8 [Arabidopsis thaliana] 1.0e-21
• FL-Next: Isoform 2 of Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana GN=MBD8 0.0
Complete
sp_v3.0_unigene1753 SustainPine v3.0 7119
• AutoFact: Chromo domain protein, putative n=1 Tax=Ricinus communis RepID=B9RDU3_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: SNF2 super family 5.128e-13
Complete
sp_v3.0_unigene2133 SustainPine v3.0 1744
• AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9STJ6_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AT-hook DNA-binding protein 8.451e-18
Complete
sp_v3.0_unigene2244 SustainPine v3.0 1708
• AutoFact: DUF296 domain containing protein 1.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-binding protein-like 4.289e-29
Complete
sp_v3.0_unigene2328 SustainPine v3.0 1582
• AutoFact: Heat shock protein DnaJ N-terminal domain-containing protein n=1 Tax=Musa acuminata RepID=Q1EPG9_MUSAC 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DnaJ domain containing protein, expressed 6.325e-06
N-terminus
sp_v3.0_unigene2449 SustainPine v3.0 2853
• AutoFact: Protein regulator of cytokinesis, putative n=1 Tax=Ricinus communis RepID=B9SYY2_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Microtubule-associated protein MAP65-1a 5.822e-27
Complete
sp_v3.0_unigene2488 SustainPine v3.0 3418
• AutoFact: pfam02373, JmjC, JmjC domain 7.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein At3g07610 4.463e-08
Putative Complete
sp_v3.0_unigene2639 SustainPine v3.0 1416
• AutoFact: SET domain protein [Triticum aestivum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: SET domain protein 3.923e-08
C-terminus
sp_v3.0_unigene2751 SustainPine v3.0 1434
• AutoFact: Trithorax, putative n=1 Tax=Ricinus communis RepID=B9RII0_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Trithorax, putative 2.532e-08
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain