Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA helicase, ATP-dependent, DEAD-box, conserved site

Term: IPR000629  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene171148 SustainPine v3.0 336
• AutoFact: GRP multi-domain protein 9.0e-09
coding
sp_v3.0_unigene171933 SustainPine v3.0 418
• AutoFact: DUF1777 multi-domain protein 7.0e-10
• Sma3: ATP-dependent RNA helicase DDX23 2.447e-09
coding
sp_v3.0_unigene182866 SustainPine v3.0 941
• AutoFact: GRP domain containing protein 1.0e-05
• Sma3: DEAD-box ATP-dependent RNA helicase 37 2.985e-08
coding
sp_v3.0_unigene182918 SustainPine v3.0 803
• AutoFact: Cytochrome P450 704C1 n=1 Tax=Pinus taeda RepID=C04C1_PINTA 0.0
• FL-Next: sp=Cytochrome P450 704C1; Pinus taeda (Loblolly pine). 0.0
• Sma3: Cytochrome P450 4.789e-16
C-terminus
sp_v3.0_unigene184477 SustainPine v3.0 473
• AutoFact: dead-box helicase [Platanus x acerifolia] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 1.77e-21
Putative C-terminus
sp_v3.0_unigene185348 SustainPine v3.0 770
• AutoFact: Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Subtilisin-like protease 1.012e-28
Internal
sp_v3.0_unigene187189 SustainPine v3.0 581
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q6I5H9_ORYSJ 8.0e-30
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Gag-pol polyprotein, putative 2.307e-06
Internal
sp_v3.0_unigene187950 SustainPine v3.0 291
• AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SW84_RICCO 1.0e-14
• FL-Next: sp=DEAD-box ATP-dependent RNA helicase 45; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 45 6.271e-09
C-terminus
sp_v3.0_unigene188400 SustainPine v3.0 542
• AutoFact: Centrin [Paramecium tetraurelia strain d4-2] ref|XP_001422974.1| hypothetical protein [Paramecium tetraurelia strain d4-2] emb|CAH03655.1| Centrin, putative [Paramecium tetraurelia] emb|CAI38936.1| centrin-related-protein,putative [Paramecium tetraurelia] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Centrin 1.916e-31
Putative Complete
sp_v3.0_unigene188943 SustainPine v3.0 385
• AutoFact: H+-translocating pyrophosphatase family n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MMB6_MICPC 3.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: H+-translocating pyrophosphatase family 6.504e-23
C-terminus
sp_v3.0_unigene190190 SustainPine v3.0 397
• AutoFact: GRP multi-domain protein 2.0e-11
• Sma3: Putative glycine rich protein 6.261e-22
coding
sp_v3.0_unigene190639 SustainPine v3.0 365
• AutoFact: Eukaryotic initiation factor 4A-III n=1 Tax=Caligus clemensi RepID=C1C237_9MAXI 3.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 9.226e-09
N-terminus
sp_v3.0_unigene191246 SustainPine v3.0 483
• AutoFact: Eukaryotic initiation factor 4A-III, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0N6A8_PHYIT 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 3.282e-09
C-terminus
sp_v3.0_unigene191280 SustainPine v3.0 324
• AutoFact: Chaperonin containing TCP1 eta subunit n=1 Tax=Polysphondylium pallidum RepID=D3BPJ6_POLPA 2.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: T-complex protein 1, alpha subunit 4.265e-24
N-terminus
sp_v3.0_unigene191383 SustainPine v3.0 534
• AutoFact: Probable eukaryotic initiation factor 4A n=5 Tax=Trypanosoma RepID=IF4A_TRYBB 7.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 2 4.041e-08
C-terminus
sp_v3.0_unigene191931 SustainPine v3.0 491
• AutoFact: myc-regulated DEAD/H box 18 RNA helicase-like (ISS) [Ostreococcus tauri] emb|CAL55333.1| myc-regulated DEAD/H box 18 RNA helicase-like (ISS) [Ostreococcus tauri] 8.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene192159 SustainPine v3.0 531
• AutoFact: EF hand family protein [Tetrahymena thermophila] gb|EAS06746.1| EF hand family protein [Tetrahymena thermophila SB210] 6.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Centrin 2.353e-18
C-terminus
sp_v3.0_unigene192582 SustainPine v3.0 493
• AutoFact: PREDICTED: eukaryotic initiation factor 4A-III-like isoform 1 [Apis mellifera] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 2.805e-09
Internal
sp_v3.0_unigene193642 SustainPine v3.0 438
• AutoFact: Putative centrin n=1 Tax=Neospora caninum Liverpool RepID=F0VGK6_NEOCA 4.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Centrin 2.934e-25
Complete
sp_v3.0_unigene193968 SustainPine v3.0 570
• AutoFact: Integrase n=1 Tax=Boechera divaricarpa RepID=B6REL8_9BRAS 2.0e-39
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.18e-18
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain