Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA helicase, ATP-dependent, DEAD-box, conserved site

Term: IPR000629  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene161271 SustainPine v3.0 462
• AutoFact: DEAD-box ATP-dependent RNA helicase 21 n=2 Tax=Arabidopsis RepID=RH21_ARATH 2.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 21 3.385e-08
C-terminus
sp_v3.0_unigene161597 SustainPine v3.0 424
• AutoFact: putative gag-pol polyprotein [Oryza sativa Japonica Group] gb|ABF96256.1| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] 4.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 8.591e-07
Internal
sp_v3.0_unigene161732 SustainPine v3.0 331
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXM6_ORYSJ 1.0e-25
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 2.849e-07
Internal
sp_v3.0_unigene161966 SustainPine v3.0 472
• AutoFact: Pyrophosphate-energized vacuolar membrane proton pump 1 n=10 Tax=core eudicotyledons RepID=AVP1_ARATH 9.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Vacuolar H+-pyrophosphatase 1.625e-20
Internal
sp_v3.0_unigene162623 SustainPine v3.0 411
• AutoFact: DEAD-box ATP-dependent RNA helicase 20 n=3 Tax=Poaceae RepID=RH20_ORYSJ 7.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 30 1.687e-08
Putative N-terminus
sp_v3.0_unigene162766 SustainPine v3.0 353
• AutoFact: Putative caltractin n=1 Tax=Neospora caninum Liverpool RepID=F0VR46_NEOCA 4.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Centrin 1.449e-25
N-terminus
sp_v3.0_unigene163095 SustainPine v3.0 328
• AutoFact: Vacuolar proton-pyrophosphatase n=1 Tax=Potamogeton distinctus RepID=A5LGI6_POTDI 2.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Vacuolar H+-pyrophosphatase 2.08e-27
Internal
sp_v3.0_unigene163697 SustainPine v3.0 310
• AutoFact: RVT_2 domain containing protein 2.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Polyprotein, putative 1.765e-07
Internal
sp_v3.0_unigene163724 SustainPine v3.0 359
• AutoFact: Subtilase family protein [Arabidopsis thaliana] gb|AAD03437.1| similar to the subtilase family of serine proteases (Pfam: PF00082, Score=50.7, E=4.7e-13, n=3) [Arabidopsis thaliana] emb|CAB40046.1| putative subtilisin-like protease [Arabidopsis thaliana] 5.0e-32
• FL-Next: tr=Subtilisin-like protein; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Xylem serine proteinase 1, putative 8.667e-23
Internal
sp_v3.0_unigene163867 SustainPine v3.0 268
• AutoFact: Chain A, Solution Structure Of The Calcium-Loaded N-Terminal Sensor Domain Of Centrin 6.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Centrin 1.319e-34
N-terminus
sp_v3.0_unigene163962 SustainPine v3.0 286
• AutoFact: Nucleotide-binding protein-like n=1 Tax=Zea mays RepID=B6TB47_MAIZE 3.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene164118 SustainPine v3.0 338
• AutoFact: RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A; AltName: Full=ATP-dependent RNA helicase eIF4A 7.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: eIF-4A-3 7.595e-08
N-terminus
sp_v3.0_unigene164698 SustainPine v3.0 324
• AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 32 dbj|BAC83715.1| putative RNA helicase [Oryza sativa Japonica Group] dbj|BAD31318.1| putative RNA helicase [Oryza sativa Japonica Group] 8.0e-06
• FL-Next: sp=DEAD-box ATP-dependent RNA helicase 32; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene164732 SustainPine v3.0 166
• AutoFact: DEAD-box ATP-dependent RNA helicase 16 [Arabidopsis thaliana] sp|Q9SW44.1|RH16_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 16 emb|CAB45452.1| RNA helicase (RH16) [Arabidopsis thaliana] emb|CAB80208.1| RNA helicase (RH16) [Arabidopsis thaliana] 6.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 16 4.425e-09
Internal
sp_v3.0_unigene164930 SustainPine v3.0 225
• AutoFact: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=5 Tax=Malpighiales RepID=PMGI_RICCO 3.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2.625e-20
Internal
sp_v3.0_unigene165378 SustainPine v3.0 146
• AutoFact: putative ATP-dependent RNA helicase [Oryza sativa] 1.0e-06
• FL-Next: sp=DEAD-box ATP-dependent RNA helicase 17; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene167071 SustainPine v3.0 372
• AutoFact: Subtilisin-like protease n=2 Tax=Arabidopsis RepID=SUBL_ARATH 4.00001e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Subtilisin-like protease 0.0
Internal
sp_v3.0_unigene169019 SustainPine v3.0 271
• AutoFact: Gly_rich multi-domain protein 7.0e-17
• Sma3: Glycine-rich RNA-binding protein 2.56e-14
coding
sp_v3.0_unigene169684 SustainPine v3.0 327
• AutoFact: GRP multi-domain protein 3.0e-16
• Sma3: Glycine-rich protein 2.897e-16
coding
sp_v3.0_unigene170036 SustainPine v3.0 237
• AutoFact: GRP multi-domain protein 1.0e-10
• Sma3: Putative glycine-rich protein 2.016e-08
coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain