Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA helicase, ATP-dependent, DEAD-box, conserved site

Term: IPR000629  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene79909 SustainPine v3.0 329
• AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 35A dbj|BAD38045.1| putative DEAD-box protein abstrakt [Oryza sativa Japonica Group] 1.0e-07
• FL-Next: sp=DEAD-box ATP-dependent RNA helicase 35A; Oryza sativa subsp. japonica (Rice). 0.0
C-terminus
sp_v3.0_unigene79936 SustainPine v3.0 241
• AutoFact: similar to ATP-dependent RNA helicase [Arabidopsis thaliana] gb|AAM48010.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] 2.0e-14
• FL-Next: sp=DEAD-box ATP-dependent RNA helicase 47, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene80111 SustainPine v3.0 125
• AutoFact: Pre-mRNA-processing ATP-dependent RNA helicase PRP5 n=2 Tax=Agaricales RepID=A8NXX3_COPC7 2.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene80531 SustainPine v3.0 114
• AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SE87_RICCO 2.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene80732 SustainPine v3.0 394
• AutoFact: ATP-dependent RNA helicase FAL1 [Coprinopsis cinerea okayama7#130] gb|EAU84657.1| ATP-dependent RNA helicase FAL1 [Coprinopsis cinerea okayama7#130] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 9.996e-12
Internal
sp_v3.0_unigene80773 SustainPine v3.0 129
• AutoFact: Unassigned protein
• FL-Next: sp=DEAD-box ATP-dependent RNA helicase 13; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene81131 SustainPine v3.0 181
• AutoFact: RNA helicase [Arabidopsis thaliana] 8.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 4.21e-08
Internal
sp_v3.0_unigene81227 SustainPine v3.0 242
• AutoFact: ATP-dependent RNA helicase dhh1 [Coprinopsis cinerea okayama7#130] gb|EAU89171.1| ATP-dependent RNA helicase dhh1 [Coprinopsis cinerea okayama7#130] 3.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 6 9.382e-08
Putative C-terminus
sp_v3.0_unigene81668 SustainPine v3.0 440
• AutoFact: Serine protease-like protein n=1 Tax=Nicotiana tabacum RepID=Q8H0H9_TOBAC 1.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene83583 SustainPine v3.0 398
coding
sp_v3.0_unigene85442 SustainPine v3.0 272
• AutoFact: PRP38_assoc multi-domain protein 5.0e-15
• Sma3: ATP-dependent RNA helicase DDX23 7.054e-10
coding
sp_v3.0_unigene93749 SustainPine v3.0 2492
• AutoFact: serine protease-like protein [Nicotiana tabacum] 0.0
• FL-Next: tr=Subtilisin-like protein; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Subtilisin-like protease 1.612e-34
C-terminus
sp_v3.0_unigene94272 SustainPine v3.0 835
• AutoFact: Subtilisin-like protein n=1 Tax=Picea abies RepID=Q40764_PICAB 0.0
• FL-Next: tr=Subtilisin-like protein; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Cucumisin, putative 2.684e-18
Putative N-terminus
sp_v3.0_unigene94442 SustainPine v3.0 427
• AutoFact: Subtilisin-like protein n=1 Tax=Picea abies RepID=Q40764_PICAB 0.0
• FL-Next: tr=Subtilisin-like protein; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Xylem serine proteinase 1, putative 5.834e-13
Internal
sp_v3.0_unigene94923 SustainPine v3.0 2674
• AutoFact: subtilisin-like serine protease [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Xylem serine proteinase 1, putative 3.934e-39
Complete
sp_v3.0_unigene94986 SustainPine v3.0 597
• AutoFact: Copia-type polyprotein, putative n=4 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH 9.99967e-42
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 2.1e-11
C-terminus
sp_v3.0_unigene95276 SustainPine v3.0 1331
• AutoFact: Cytochrome P450, putative n=1 Tax=Ricinus communis RepID=B9RCD6_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cytochrome P450 1.335e-20
C-terminus
sp_v3.0_unigene95613 SustainPine v3.0 656
• AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SW84_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 45 8.17e-08
Putative N-terminus
sp_v3.0_unigene95918 SustainPine v3.0 316
• AutoFact: DEAD-box ATP-dependent RNA helicase 24 [Arabidopsis thaliana] sp|O22907.2|RH24_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 24 gb|AAL15330.1| At2g47330/T8I13.17 [Arabidopsis thaliana] gb|AAB63833.2| putative ATP-dependent RNA helicase [Arabidop 3.0e-13
• FL-Next: sp=DEAD-box ATP-dependent RNA helicase 24; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene96094 SustainPine v3.0 673
• AutoFact: DEAD-box ATP-dependent RNA helicase 35 [Arabidopsis thaliana] sp|Q9LU46.1|RH35_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 35 dbj|BAA97391.1| DEAD-box protein abstrakt [Arabidopsis thaliana] dbj|BAE98527.1| DEAD-box protein abstrakt [Arabidops 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 7.159e-08
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain