Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Beta tubulin, autoregulation binding site

Term: IPR013838  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene158659 SustainPine v3.0 160
AutoFact: 60S ribosomal protein L11 n=19 Tax=leotiomyceta RepID=Q4WP20_ASPFU 5.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L11 3.151e-11
Internal
sp_v3.0_unigene159135 SustainPine v3.0 332
AutoFact: Alpha-tubulin n=1 Tax=Hymenolepis diminuta RepID=Q8T672_HYMDI 1.0e-36
FL-Next: tr=Alpha tubulin 1; Pseudotsuga menziesii var. menziesii. 0.0
Sma3: Alpha-tubulin 5.181e-33
N-terminus
sp_v3.0_unigene159251 SustainPine v3.0 181
AutoFact: alpha-tubulin [Trichodina nobilis] gb|ABQ65174.1| alpha-tubulin [Trichodina heterodentata] 1.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Alpha tubulin 1.132e-13
Internal
sp_v3.0_unigene159314 SustainPine v3.0 349
AutoFact: PREDICTED: similar to tubulin, alpha 2 isoform 2 [Strongylocentrotus purpuratus] ref|XP_001177431.1| PREDICTED: similar to tubulin, alpha 2 isoform 2 [Strongylocentrotus purpuratus] 5.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Alpha-tubulin 3.777e-12
C-terminus
sp_v3.0_unigene159619 SustainPine v3.0 485
AutoFact: Integrase n=1 Tax=Populus trichocarpa RepID=Q0ZCD0_POPTR 0.0
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Putative C-terminus
sp_v3.0_unigene159760 SustainPine v3.0 495
AutoFact: Unconventional myosin n=2 Tax=Helianthus annuus RepID=O24518_HELAN 1.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Myosin XI, putative 2.567e-23
C-terminus
sp_v3.0_unigene160016 SustainPine v3.0 407
AutoFact: Lipid phosphate phosphatase 2 n=2 Tax=Arabidopsis RepID=LPP2_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Phosphatidic acid phosphatase, putative 4.084e-12
Internal
sp_v3.0_unigene160115 SustainPine v3.0 489
AutoFact: Integrase n=1 Tax=Populus trichocarpa RepID=Q0ZCD0_POPTR 5.99994e-41
FL-Next: tr=Integrase; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene160750 SustainPine v3.0 427
AutoFact: F5K24.2 protein n=1 Tax=Arabidopsis thaliana RepID=Q9ZPG3_ARATH 4.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: F5K24.2 protein 8.772e-06
Internal
sp_v3.0_unigene161052 SustainPine v3.0 424
AutoFact: Gag/pol polyprotein n=3 Tax=Pisum sativum RepID=Q6WAY3_PEA 2.0e-35
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Reverse transcriptase family protein 8.897e-07
C-terminus
sp_v3.0_unigene161482 SustainPine v3.0 204
AutoFact: cysteine-rich receptor-like protein kinase 2 [Arabidopsis thaliana] sp|Q9CAL3.1|CRK2_ARATH RecName: Full=Cysteine-rich receptor-like protein kinase 2; Short=Cysteine-rich RLK2; Flags: Precursor gb|AAG52471.1|AC010796_10 putative protein kinase; 37247-3480 5.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr19 scaffold_4, whole genome shotgun sequence 1.342e-18
Internal
sp_v3.0_unigene161556 SustainPine v3.0 311
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene161696 SustainPine v3.0 424
AutoFact: Unassigned protein
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Putative C-terminus
sp_v3.0_unigene161703 SustainPine v3.0 396
AutoFact: Cytochrome P450, putative n=1 Tax=Ricinus communis RepID=B9SHL8_RICCO 4.0e-28
FL-Next: sp=Abietadienol/abietadienal oxidase; Pinus taeda (Loblolly pine). 0.0
Putative C-terminus
sp_v3.0_unigene162480 SustainPine v3.0 472
AutoFact: NAC protein 1 n=2 Tax=Elaeis guineensis RepID=Q2XQF5_ELAGV 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: NAC domain protein, IPR003441 4.38396e-41
N-terminus
sp_v3.0_unigene163870 SustainPine v3.0 316
AutoFact: RVT_1 domain containing protein 7.0e-12
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Reverse transcriptase 1.676e-06
Internal
sp_v3.0_unigene164188 SustainPine v3.0 275
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q56GE2_GINBI 3.0e-20
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative C-terminus
sp_v3.0_unigene164207 SustainPine v3.0 250
AutoFact: DUF868 domain containing protein 1.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene164741 SustainPine v3.0 195
AutoFact: putative serine/threonine kinase [Platanus x acerifolia] 9.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome undetermined scaffold_278, whole genome shotgun sequence 1.404e-17
Internal
sp_v3.0_unigene165308 SustainPine v3.0 442
AutoFact: Retrotransposon gag protein n=1 Tax=Asparagus officinalis RepID=Q2AA50_ASPOF 7.0e-31
FL-Next: tr=Retrotransposon gag protein; Asparagus officinalis (Garden asparagus). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain