Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, SWIM-type

Term: IPR007527  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene54544 SustainPine v3.0 440
AutoFact: Retroelement pol polyprotein-like n=4 Tax=Arabidopsis thaliana RepID=Q9FZN9_ARATH 1.0e-25
FL-Next: tr=Putative uncharacterized protein; Beta vulgaris (Sugar beet). 0.0
Internal
sp_v3.0_unigene54661 SustainPine v3.0 243
AutoFact: Gag-pol polyprotein, putative n=1 Tax=Solanum demissum RepID=Q6L3Y5_SOLDE 2.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 3.285e-08
Internal
sp_v3.0_unigene54682 SustainPine v3.0 226
AutoFact: Gag-Pol n=1 Tax=Ipomoea batatas RepID=Q6BCY1_IPOBA 6.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 4.359e-21
Internal
sp_v3.0_unigene54771 SustainPine v3.0 335
AutoFact: Putative gag-pol polyprotein n=1 Tax=Fragaria x ananassa RepID=C6GFP7_FRAAN 6.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.536e-20
Internal
sp_v3.0_unigene54984 SustainPine v3.0 510
AutoFact: Gag-pol polyprotein (Fragment) n=1 Tax=Fraxinus excelsior RepID=D6QY00_FRAEX 1.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copia-like retroelement pol polyprotein 1.525e-09
Internal
sp_v3.0_unigene55426 SustainPine v3.0 368
AutoFact: Unassigned protein
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Putative N-terminus
sp_v3.0_unigene55434 SustainPine v3.0 512
AutoFact: Retrotransposon gag protein n=1 Tax=Asparagus officinalis RepID=Q2AA50_ASPOF 9.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene55519 SustainPine v3.0 283
AutoFact: GK15001 gene product from transcript GK15001-RA 3.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 6.69e-11
Internal
sp_v3.0_unigene55848 SustainPine v3.0 507
AutoFact: rve domain containing protein 5.0e-22
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative N-terminus
sp_v3.0_unigene56302 SustainPine v3.0 184
AutoFact: Unassigned protein 1.0e-17
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene56503 SustainPine v3.0 248
AutoFact: Retrotransposon protein, putative, Ty1-copia subclass n=2 Tax=Oryza sativa RepID=Q7XFV5_ORYSJ 2.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene56560 SustainPine v3.0 189
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene56724 SustainPine v3.0 436
AutoFact: RVT_2 domain containing protein 4.0e-10
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 3.623e-11
Internal
sp_v3.0_unigene56877 SustainPine v3.0 262
AutoFact: Retrotransposon gag protein n=1 Tax=Asparagus officinalis RepID=Q2AA50_ASPOF 4.0e-29
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Putative N-terminus
sp_v3.0_unigene57144 SustainPine v3.0 308
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q56GE2_GINBI 4.0e-31
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Reverse transcriptase 4.608e-11
Internal
sp_v3.0_unigene57409 SustainPine v3.0 458
AutoFact: GK15001 gene product from transcript GK15001-RA 1.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 9.023e-16
Internal
sp_v3.0_unigene57818 SustainPine v3.0 376
AutoFact: Putative gag-pol polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6L3N8_SOLDE 2.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.279e-17
Internal
sp_v3.0_unigene57990 SustainPine v3.0 495
AutoFact: Retrotransposon gag protein n=1 Tax=Asparagus officinalis RepID=Q2AA50_ASPOF 5.0e-39
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Reverse transcriptase 2.207e-08
Putative Complete
sp_v3.0_unigene58681 SustainPine v3.0 400
AutoFact: Putative gag-pol polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6L3N8_SOLDE 5.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 0.0
Internal
sp_v3.0_unigene58996 SustainPine v3.0 275
AutoFact: Retrotransposon gag protein n=1 Tax=Asparagus officinalis RepID=Q2AA50_ASPOF 2.0e-21
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain