Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chromatin assembly or disassembly

Term: GO:0006333  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene167908 SustainPine v3.0 300
• AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 4.0e-24
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Pol protein integrase region 6.177e-38
Internal
sp_v3.0_unigene167916 SustainPine v3.0 324
• AutoFact: Putaive copia-like retrotransposon polyprotein, 5'-partial (Fragment) n=2 Tax=Oryza sativa RepID=Q8W5D1_ORYSA 3.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 7.34e-35
Internal
sp_v3.0_unigene167934 SustainPine v3.0 264
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=16 Tax=Magnoliophyta RepID=Q7XG23_ORYSJ 6.0e-19
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Gag-Pol polyprotein 5.352e-08
Putative C-terminus
sp_v3.0_unigene167935 SustainPine v3.0 253
• AutoFact: Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Trichinella spiralis RepID=E5SB91_TRISP 1.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.202e-09
Internal
sp_v3.0_unigene167979 SustainPine v3.0 245
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q7XEK0_ORYSJ 5.0e-15
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Putative C-terminus
sp_v3.0_unigene167998 SustainPine v3.0 205
• AutoFact: Pol protein integrase region (Fragment) n=1 Tax=Pinus brutia RepID=Q9M6N4_9CONI 5.0e-22
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene168023 SustainPine v3.0 360
• AutoFact: Putative integrase (Fragment) n=7 Tax=Cucumis melo RepID=B0B0F4_CUCME 5.0e-25
• FL-Next: tr=Putative uncharacterized protein; Beta vulgaris (Sugar beet). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.604e-10
Internal
sp_v3.0_unigene168068 SustainPine v3.0 147
• AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 2.0e-08
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Internal
sp_v3.0_unigene168177 SustainPine v3.0 228
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q75HH6_ORYSJ 4.0e-17
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.14399e-43
Internal
sp_v3.0_unigene168296 SustainPine v3.0 118
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Morus bombycis RepID=Q9AVM8_9ROSA 8.0e-09
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Reverse transcriptase 1.4013e-45
Internal
sp_v3.0_unigene183452 SustainPine v3.0 597
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=2 Tax=Poaceae RepID=Q2QUR6_ORYSJ 0.0
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.833e-30
C-terminus
sp_v3.0_unigene184753 SustainPine v3.0 501
• AutoFact: T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH 2.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Copia-type polyprotein 2.608e-10
Putative C-terminus
sp_v3.0_unigene185037 SustainPine v3.0 458
• AutoFact: pfam10497, zf-4CXXC_R1, Zinc-finger domain of monoamine-oxidase A repressor R1 8.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene185112 SustainPine v3.0 317
• AutoFact: Integrase (Fragment) n=1 Tax=Gossypium herbaceum RepID=Q7XYU4_GOSHE 4.0e-25
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 5.085e-09
Internal
sp_v3.0_unigene185359 SustainPine v3.0 599
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 1.416e-08
Internal
sp_v3.0_unigene185606 SustainPine v3.0 593
• AutoFact: Polyprotein n=1 Tax=Solanum lycopersicum RepID=Q9ZS84_SOLLC 2.0e-32
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene185688 SustainPine v3.0 332
• AutoFact: Receptor-like kinase (Fragment) n=1 Tax=Hordeum vulgare RepID=Q9SWU6_HORVU 6.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative rust resistance kinase Lr10 2.309e-30
Internal
sp_v3.0_unigene186261 SustainPine v3.0 353
• AutoFact: retrotransposable element Tf2 155 kDa protein type 1-like 9.0e-28
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.609e-15
Internal
sp_v3.0_unigene186492 SustainPine v3.0 526
• AutoFact: Polyprotein n=1 Tax=Oryza australiensis RepID=Q0ZLH4_9ORYZ 0.0
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Putative C-terminus
sp_v3.0_unigene186908 SustainPine v3.0 466
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q7XEK0_ORYSJ 2.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 9.7e-21
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain