Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chromatin assembly or disassembly

Term: GO:0006333  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene62010 SustainPine v3.0 315
• AutoFact: Gypsy/Ty3 element polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C7H8_ARATH 6.0e-27
• FL-Next: tr=Gypsy/Ty3 element polyprotein, putative; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene62013 SustainPine v3.0 235
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Picea abies RepID=Q9FY10_PICAB 1.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 3.319e-10
Internal
sp_v3.0_unigene62016 SustainPine v3.0 173
• AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 4.0e-12
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Internal
sp_v3.0_unigene62036 SustainPine v3.0 320
• AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 1.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative polyprotein 5.005e-28
Putative Complete
sp_v3.0_unigene62046 SustainPine v3.0 246
• AutoFact: Putative gag-pol polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q9FW76_ORYSJ 2.0e-18
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, unclassified 4.938e-09
Putative N-terminus
sp_v3.0_unigene62068 SustainPine v3.0 206
• AutoFact: OSJNBa0059D20.8 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XSK7_ORYSJ 1.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene62075 SustainPine v3.0 351
• AutoFact: Polyprotein n=1 Tax=Glycine max RepID=Q84ZV5_SOYBN 8.0e-25
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Putative retroelement 2.896e-06
Putative N-terminus
sp_v3.0_unigene62111 SustainPine v3.0 281
• AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold n=1 Tax=Medicago truncatula RepID=A2Q2C7_MEDTR 4.0e-23
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, unclassified, expressed 1.02e-06
N-terminus
sp_v3.0_unigene62112 SustainPine v3.0 320
• AutoFact: Unassigned protein
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Putative C-terminus
sp_v3.0_unigene62126 SustainPine v3.0 249
• AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9XE44_ARATH 4.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 1.013e-09
Putative Complete
sp_v3.0_unigene62195 SustainPine v3.0 234
• AutoFact: OSJNBb0022F23.14 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XR16_ORYSJ 8.0e-16
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 8.558e-15
Putative C-terminus
sp_v3.0_unigene62231 SustainPine v3.0 200
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q60ET2_ORYSJ 1.0e-13
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Gag-Pol polyprotein 1.347e-13
Internal
sp_v3.0_unigene62243 SustainPine v3.0 379
• AutoFact: RVT_1 domain containing protein 2.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.094e-39
Putative Complete
sp_v3.0_unigene62330 SustainPine v3.0 286
• AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 4.0e-19
• FL-Next: tr=Polyprotein; Primula vulgaris. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.572e-09
Internal
sp_v3.0_unigene62400 SustainPine v3.0 120
• AutoFact: MYST-type acetyltransferase (Fragment) n=1 Tax=Solanum chacoense RepID=Q6V9I3_SOLCH 1.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone acetyltransferase 2.153e-06
Internal
sp_v3.0_unigene62519 SustainPine v3.0 226
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus radiata RepID=Q56GF9_PINRA 4.0e-25
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 8.968e-07
Putative N-terminus
sp_v3.0_unigene62561 SustainPine v3.0 237
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q7XEK0_ORYSJ 1.0e-18
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 3.636e-10
Internal
sp_v3.0_unigene62569 SustainPine v3.0 282
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Taxus baccata RepID=Q56GF5_TAXBA 3.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Reverse transcriptase 1.824e-28
C-terminus
sp_v3.0_unigene62734 SustainPine v3.0 114
• AutoFact: Polyprotein n=1 Tax=Glycine max RepID=Q84ZV5_SOYBN 1.0e-06
• FL-Next: tr=Polyprotein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene62739 SustainPine v3.0 269
• AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 2.0e-16
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain