Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chromatin assembly or disassembly

Term: GO:0006333  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene54369 SustainPine v3.0 288
• AutoFact: gag-pol polyprotein [Uniola paniculata] 2.0e-19
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.517e-38
Putative C-terminus
sp_v3.0_unigene54371 SustainPine v3.0 432
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa RepID=Q8S7F8_ORYSA 9.0e-31
• FL-Next: tr=Os03g0377400 protein; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Retrotransposon protein, putative, unclassified, expressed 4.11e-12
Internal
sp_v3.0_unigene54387 SustainPine v3.0 173
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Taxus baccata RepID=Q56GF5_TAXBA 3.0e-13
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, unclassified 6.473e-09
Internal
sp_v3.0_unigene54461 SustainPine v3.0 369
• AutoFact: polyprotein [Glycine max] 8.0e-28
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, unclassified 3.12e-12
Putative C-terminus
sp_v3.0_unigene54524 SustainPine v3.0 310
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene54619 SustainPine v3.0 298
• AutoFact: Pol protein integrase region (Fragment) n=6 Tax=Spermatophyta RepID=Q9M6N3_9CONI 1.0e-33
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Pol protein integrase region 0.0
Internal
sp_v3.0_unigene54637 SustainPine v3.0 268
• AutoFact: Putative 22 kDa kafirin cluster; Ty3-Gypsy type n=2 Tax=Oryza sativa RepID=Q7G6A5_ORYSJ 6.0e-15
• FL-Next: tr=Putative 22 kDa kafirin cluster; Ty3-Gypsy type; Oryza sativa (Rice). 0.0
Internal
sp_v3.0_unigene54660 SustainPine v3.0 424
• AutoFact: Pol protein n=1 Tax=Cucumis melo subsp. melo RepID=Q84KB0_CUCME 4.0e-30
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Internal
sp_v3.0_unigene54702 SustainPine v3.0 355
• AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 4.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 9.278e-21
Putative Complete
sp_v3.0_unigene54758 SustainPine v3.0 344
• AutoFact: Os09g0491900 protein n=3 Tax=Oryza sativa Japonica Group RepID=Q0J0N1_ORYSJ 6.0e-39
• FL-Next: tr=Putative polyprotein; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 7.297e-18
Internal
sp_v3.0_unigene54763 SustainPine v3.0 379
• AutoFact: OSJNBa0017P10.11 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7F9M4_ORYSJ 2.0e-16
• FL-Next: tr=OSJNBa0017P10.11 protein; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 1.163e-06
Internal
sp_v3.0_unigene54764 SustainPine v3.0 273
• AutoFact: Os06g0493000 protein n=2 Tax=Oryza sativa Japonica Group RepID=Q0DC29_ORYSJ 1.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.925e-19
Putative Complete
sp_v3.0_unigene54772 SustainPine v3.0 359
• AutoFact: Unassigned protein
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.626e-21
C-terminus
sp_v3.0_unigene54806 SustainPine v3.0 460
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 1.966e-26
Putative Complete
sp_v3.0_unigene54946 SustainPine v3.0 344
• AutoFact: pol protein integrase region [Pinus brutia] 3.0e-32
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Pol protein integrase region 1.87774e-43
Internal
sp_v3.0_unigene54972 SustainPine v3.0 468
• AutoFact: Putative gag-pol polyprotein n=1 Tax=Zea mays RepID=Q8SA91_MAIZE 1.0e-26
• FL-Next: tr=Putative gag-pol polyprotein; Zea mays (Maize). 0.0
Internal
sp_v3.0_unigene55008 SustainPine v3.0 528
• AutoFact: OSJNBa0070D17.9 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XLT9_ORYSJ 2.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.723e-20
Putative Complete
sp_v3.0_unigene55029 SustainPine v3.0 427
• AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 8.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 9.827e-20
Putative Complete
sp_v3.0_unigene55072 SustainPine v3.0 188
• AutoFact: Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula] 2.0e-13
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 8.40779e-45
Internal
sp_v3.0_unigene55109 SustainPine v3.0 453
• AutoFact: Elongation factor 3 , putative n=4 Tax=Onygenales RepID=C5PC43_COCP7 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain