Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chromatin binding

Term: GO:0003682  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene164717 SustainPine v3.0 391
AutoFact: T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH 3.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copia-type polyprotein 1.328e-10
Internal
sp_v3.0_unigene164730 SustainPine v3.0 178
AutoFact: Reverse transcriptase (Fragment) n=2 Tax=Sciadopitys verticillata RepID=Q56GF7_SCIVE 3.0e-20
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Reverse transcriptase 0.0
Internal
sp_v3.0_unigene164779 SustainPine v3.0 229
AutoFact: Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa RepID=Q10RT1_ORYSJ 7.0e-16
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Putative retroelement 1.819e-08
Internal
sp_v3.0_unigene164796 SustainPine v3.0 387
AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 2.0e-32
FL-Next: tr=Gypsy/Ty-3 retroelement polyprotein; 69905-74404; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Retrotransposon protein, putative, unclassified 6.797e-06
Internal
sp_v3.0_unigene164942 SustainPine v3.0 288
AutoFact: rve domain containing protein 2.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene165002 SustainPine v3.0 127
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Taxus baccata RepID=Q56GF5_TAXBA 2.0e-11
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Internal
sp_v3.0_unigene165034 SustainPine v3.0 242
AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 3.0e-18
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.7236e-43
Internal
sp_v3.0_unigene165036 SustainPine v3.0 290
AutoFact: Polyprotein n=1 Tax=Sorghum bicolor RepID=Q9XE68_SORBI 6.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Putative Complete
sp_v3.0_unigene165130 SustainPine v3.0 228
AutoFact: OSJNBa0035O13.13 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XSL7_ORYSJ 4.0e-16
FL-Next: tr=Putative uncharacterized protein; Asparagus officinalis (Garden asparagus). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.657e-22
Putative N-terminus
sp_v3.0_unigene165180 SustainPine v3.0 268
AutoFact: Putative transposase n=1 Tax=Arabidopsis thaliana RepID=O81190_ARATH 4.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: HAT family dimerisation domain containing protein 2.296e-07
Internal
sp_v3.0_unigene165224 SustainPine v3.0 210
AutoFact: Retrotransposon protein, putative, Ty3-gypsy sub-class n=1 Tax=Oryza sativa Japonica Group RepID=Q53JQ7_ORYSJ 2.0e-15
FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 6.965e-23
Internal
sp_v3.0_unigene165242 SustainPine v3.0 343
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q53NJ3_ORYSJ 9.0e-18
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene165328 SustainPine v3.0 305
AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 7.0e-18
FL-Next: tr=Putative uncharacterized protein P0001A07.10; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Retrotransposon protein, putative, unclassified 9.764e-06
Internal
sp_v3.0_unigene165406 SustainPine v3.0 470
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QLK1_ORYSJ 1.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative gag-pol polyprotein 1.536e-13
Internal
sp_v3.0_unigene165514 SustainPine v3.0 344
AutoFact: rve domain containing protein 4.0e-09
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Gag-Pol polyprotein 3.67e-09
Internal
sp_v3.0_unigene165584 SustainPine v3.0 349
AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 5.0e-30
FL-Next: tr=Polyprotein; Primula vulgaris. 0.0
Sma3: Pol protein integrase region 6.854e-25
Internal
sp_v3.0_unigene165718 SustainPine v3.0 494
AutoFact: Unassigned protein
FL-Next: tr=Mutant gag-pol polyprotein; Pisum sativum (Garden pea). 0.0
Internal
sp_v3.0_unigene165783 SustainPine v3.0 285
AutoFact: Protein kinase [Medicago truncatula] 3.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative rust resistance kinase Lr10 4.383e-34
Internal
sp_v3.0_unigene165811 SustainPine v3.0 407
AutoFact: OSIGBa0118P15.5 protein n=1 Tax=Oryza sativa RepID=Q01KK6_ORYSA 4.0e-22
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene165858 SustainPine v3.0 537
AutoFact: T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.208e-17
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain