Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chromatin binding

Term: GO:0003682  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene162630 SustainPine v3.0 376
• AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 5.0e-32
• FL-Next: tr=Polyprotein; Primula vulgaris. 0.0
Internal
sp_v3.0_unigene162699 SustainPine v3.0 269
• AutoFact: putative polyprotein [Oryza sativa Japonica Group] 1.0e-18
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
N-terminus
sp_v3.0_unigene162730 SustainPine v3.0 377
• AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 7.0e-26
• FL-Next: tr=Gypsy/Ty-3 retroelement polyprotein; 69905-74404; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene162735 SustainPine v3.0 373
• AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 7.0e-38
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Pol protein integrase region 0.0
Internal
sp_v3.0_unigene162807 SustainPine v3.0 330
• AutoFact: WRKY transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RDW9_RICCO 3.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: WRKY69-superfamily of TFs having WRKY and zinc finger domains 1.175e-07
Putative C-terminus
sp_v3.0_unigene162829 SustainPine v3.0 392
• AutoFact: Putative retrotransposon polyprotein n=1 Tax=Ipomoea batatas RepID=Q5MG92_IPOBA 5.0e-30
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Gag-Pol polyprotein 3.298e-14
Putative C-terminus
sp_v3.0_unigene162832 SustainPine v3.0 456
• AutoFact: Putative retrotransposon protein n=1 Tax=Phyllostachys edulis RepID=D3IVJ7_9POAL 1.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Putative Complete
sp_v3.0_unigene162849 SustainPine v3.0 270
• AutoFact: Unassigned protein
• FL-Next: tr=Uncharacterized protein; Zea mays (Maize). 0.0
• Sma3: Os07g0195900 protein 8.772e-06
Internal
sp_v3.0_unigene162867 SustainPine v3.0 188
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q7XEK0_ORYSJ 1.0e-11
• FL-Next: tr=Retrotransposon protein, putative, unclassified; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene162877 SustainPine v3.0 458
• AutoFact: Gag-pol polyprotein n=1 Tax=Silene latifolia RepID=E7BQD4_SILLA 7.0e-24
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 8.112e-07
Putative C-terminus
sp_v3.0_unigene162885 SustainPine v3.0 486
• AutoFact: T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH 7.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Copia-type polyprotein 5.305e-11
Internal
sp_v3.0_unigene162923 SustainPine v3.0 471
• AutoFact: F6N18.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LPK1_ARATH 1.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Copia-type polyprotein 2.608e-10
Internal
sp_v3.0_unigene162930 SustainPine v3.0 371
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=8 Tax=Oryza sativa RepID=Q2QR60_ORYSJ 6.0e-22
• FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.412e-08
Internal
sp_v3.0_unigene162957 SustainPine v3.0 399
• AutoFact: Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa RepID=Q10RT1_ORYSJ 3.0e-13
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
C-terminus
sp_v3.0_unigene162963 SustainPine v3.0 318
• AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 4.0e-06
• FL-Next: tr=Gypsy/Ty-3 retroelement polyprotein; 69905-74404; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Gypsy/Ty-3 retroelement polyprotein 9.747e-06
Internal
sp_v3.0_unigene162997 SustainPine v3.0 274
• AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9SQW9_ARATH 9.0e-29
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 0.0
C-terminus
sp_v3.0_unigene163018 SustainPine v3.0 305
• AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 3.0e-27
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Pol protein integrase region 0.0
Internal
sp_v3.0_unigene163039 SustainPine v3.0 420
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus radiata RepID=Q56GF9_PINRA 1.0e-35
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 0.0
C-terminus
sp_v3.0_unigene163042 SustainPine v3.0 349
• AutoFact: Unassigned protein
• FL-Next: tr=Putative retrotransposon protein; Phyllostachys edulis. 0.0
• Sma3: Os12g0450200 protein 9.747e-06
Internal
sp_v3.0_unigene163066 SustainPine v3.0 259
• AutoFact: pfam00078, RVT_1, Reverse transcriptase (RNA-dependent DNA polymerase) 3.0e-17
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain