Sustainpine_db
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Name: chromatin

Term: GO:0000785  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene46733 SustainPine v3.0 600
AutoFact: RVT_1 domain containing protein 3.0e-19
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
N-terminus
sp_v3.0_unigene46789 SustainPine v3.0 329
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Sciadopitys verticillata RepID=Q4JQ38_SCIVE 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 4.483e-34
Internal
sp_v3.0_unigene46855 SustainPine v3.0 688
AutoFact: Pol protein integrase region (Fragment) n=6 Tax=Spermatophyta RepID=Q9M6N3_9CONI 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Pol protein integrase region 0.0
Internal
sp_v3.0_unigene46861 SustainPine v3.0 357
AutoFact: Gag-pol polyprotein n=3 Tax=Zea mays RepID=Q8L7J3_MAIZE 9.0e-29
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Gag-Pol polyprotein 1.331e-12
Internal
sp_v3.0_unigene47323 SustainPine v3.0 231
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Cycas revoluta RepID=Q4JQ45_CYCRE 4.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 8.057e-33
Internal
sp_v3.0_unigene47780 SustainPine v3.0 722
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QLK1_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.921e-17
Internal
sp_v3.0_unigene48229 SustainPine v3.0 4333
AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Polyprotein 9.513e-09
Complete
sp_v3.0_unigene49458 SustainPine v3.0 512
AutoFact: Integrase (Fragment) n=1 Tax=Gossypium hirsutum RepID=Q7XYU1_GOSHI 5.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Gag-Pol polyprotein 5.766e-13
Putative Complete
sp_v3.0_unigene49513 SustainPine v3.0 4243
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXM6_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.186e-15
Complete
sp_v3.0_unigene49924 SustainPine v3.0 365
AutoFact: OSJNBa0091D06.8 protein n=1 Tax=Oryza sativa RepID=Q7XU13_ORYSA 4.0e-28
FL-Next: tr=Similar to Arabidopsis thaliana chromosome II BAC F26H6; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Retrotransposon protein, putative, unclassified 1.12e-10
Internal
sp_v3.0_unigene50669 SustainPine v3.0 752
AutoFact: RVT_1 domain containing protein 2.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, unclassified 5.49e-11
Putative Complete
sp_v3.0_unigene50872 SustainPine v3.0 246
AutoFact: OSJNBa0087O24.13 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XPJ7_ORYSJ 1.0e-15
FL-Next: tr=Retrotransposon protein, putative, unclassified; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: OSJNBa0087O24.13 protein 7.31e-06
Internal
sp_v3.0_unigene51270 SustainPine v3.0 546
AutoFact: Gag-pol polyprotein n=1 Tax=Silene latifolia RepID=E7BQD5_SILLA 8.0e-37
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Gag-pol polyprotein, putative 2.505e-07
Internal
sp_v3.0_unigene51376 SustainPine v3.0 529
AutoFact: Polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q94LA8_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.696e-20
Internal
sp_v3.0_unigene51554 SustainPine v3.0 193
AutoFact: Putative polyprotein n=1 Tax=Zea mays RepID=Q8SA93_MAIZE 8.0e-11
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene51662 SustainPine v3.0 447
AutoFact: rve domain containing protein 3.0e-13
FL-Next: tr=Putative retrotransposon protein; Phyllostachys edulis. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.27518e-43
Internal
sp_v3.0_unigene51711 SustainPine v3.0 412
AutoFact: Reverse transcriptase (Fragment) n=7 Tax=Prunus mume RepID=C8C9R0_PRUMU 0.0
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.991e-35
Putative Complete
sp_v3.0_unigene51712 SustainPine v3.0 404
AutoFact: Reverse transcriptase (Fragment) n=7 Tax=Prunus mume RepID=C8C9R0_PRUMU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Reverse transcriptase 1.43e-21
C-terminus
sp_v3.0_unigene51713 SustainPine v3.0 413
AutoFact: RVT_1 domain containing protein 2.0e-20
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.4013e-45
Putative Complete
sp_v3.0_unigene51714 SustainPine v3.0 406
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Ginkgo biloba RepID=O82684_GINBI 1.0e-39
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Reverse transcriptase 8.6e-17
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain