Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Ribosomal protein S1, RNA-binding domain

Term: IPR003029  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene106651 SustainPine v3.0 353
AutoFact: SH2 motif; Alcohol dehydrogenase, zinc-containing; Resolvase, RNase H-like fold; Nucleic acid-binding, OB-fold, subgroup [Medicago truncatula] 9.99967e-42
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Global transcription factor group 3.001e-10
Internal
sp_v3.0_unigene106774 SustainPine v3.0 1753
AutoFact: exosome complex component RRP4 [Arabidopsis thaliana] gb|AAC72108.1| Similar to hypothetical protein SPAC2F7.14c gi|1052797 from Schizosaccharomyces pombe cosmid gb|Z50142 [Arabidopsis thaliana] gb|AAQ65156.1| At1g03360 [Arabidopsis thaliana] dbj|BAD43995 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene110041 SustainPine v3.0 473
AutoFact: helicase , IBR and zinc finger protein domain-containing protein [Arabidopsis thaliana] gb|AED91533.1| helicase , IBR and zinc finger protein domain-containing protein [Arabidopsis thaliana] 7.0e-38
FL-Next: sp=Putative uncharacterized protein At4g01020, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent RNA helicase, putative 1.852e-21
Internal
sp_v3.0_unigene110831 SustainPine v3.0 379
AutoFact: polyribonucleotide phophorylase [Spinacia oleracea] 1.0e-18
FL-Next: tr=Polyribonucleotide nucleotidyltransferase; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Sma3: Polynucleotide phosphorylase 1.657e-08
Putative N-terminus
sp_v3.0_unigene110922 SustainPine v3.0 283
AutoFact: putative 30S ribosomal protein S1 [Oryza sativa Japonica Group] 1.0e-15
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene111128 SustainPine v3.0 182
AutoFact: putative polyribonucleotide nucleotidyltransferase [Oryza sativa Japonica Group] 1.0e-09
FL-Next: tr=Putative uncharacterized protein Sb04g026110; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Internal
sp_v3.0_unigene112282 SustainPine v3.0 317
AutoFact: ATP-dependent RNA helicase, putative n=3 Tax=Arabidopsis thaliana RepID=Q9C7G2_ARATH 8.99998e-41
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent RNA helicase, putative 5.012e-24
Internal
sp_v3.0_unigene115908 SustainPine v3.0 224
AutoFact: SH2 motif; Alcohol dehydrogenase, zinc-containing; Resolvase, RNase H-like fold; Nucleic acid-binding, OB-fold, subgroup n=1 Tax=Medicago truncatula RepID=Q2HUT6_MEDTR 3.0e-07
FL-Next: tr=LCR/BET1; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene117632 SustainPine v3.0 290
AutoFact: SH2 motif; Alcohol dehydrogenase, zinc-containing; Resolvase, RNase H-like fold; Nucleic acid-binding, OB-fold, subgroup n=1 Tax=Medicago truncatula RepID=Q2HUT6_MEDTR 8.0e-12
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene129105 SustainPine v3.0 402
AutoFact: RNAse E/G-like protein [Arabidopsis thaliana] gb|AAM13212.1| putative ribonuclease E [Arabidopsis thaliana] gb|AAP68232.1| At2g04270 [Arabidopsis thaliana] gb|AEC05814.1| RNAse E/G-like protein [Arabidopsis thaliana] 4.06377e-44
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Putative ribonuclease E 2.076e-09
Internal
sp_v3.0_unigene129271 SustainPine v3.0 367
AutoFact: Unassigned protein 2.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene131364 SustainPine v3.0 362
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 1.00053e-42
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene131682 SustainPine v3.0 697
AutoFact: [J] COG1097 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) 7.0e-20
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative C-terminus
sp_v3.0_unigene136495 SustainPine v3.0 222
AutoFact: polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana] emb|CAB43864.1| polynucleotide phosphorylase [Arabidopsis thaliana] emb|CAB43865.1| polynucleotide phosphorylase [Arabidopsis thaliana] emb|CAB87625.1| polynucleotide phosphorylase [Arabidop 3.0e-23
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene142966 SustainPine v3.0 445
AutoFact: Eukaryotic translation initiation factor 2 subunit 1 n=3 Tax=Arabidopsis RepID=Q9SIZ2_ARATH 9.00054e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Eukaryotic translation initiation factor 2 alpha subunit 5.743e-09
Internal
sp_v3.0_unigene144168 SustainPine v3.0 1103
AutoFact: exosome complex component RRP4 [Arabidopsis thaliana] gb|AAC72108.1| Similar to hypothetical protein SPAC2F7.14c gi|1052797 from Schizosaccharomyces pombe cosmid gb|Z50142 [Arabidopsis thaliana] gb|AAQ65156.1| At1g03360 [Arabidopsis thaliana] dbj|BAD43995 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene144777 SustainPine v3.0 608
AutoFact: exosome complex component RRP4 [Arabidopsis thaliana] gb|AAC72108.1| Similar to hypothetical protein SPAC2F7.14c gi|1052797 from Schizosaccharomyces pombe cosmid gb|Z50142 [Arabidopsis thaliana] gb|AAQ65156.1| At1g03360 [Arabidopsis thaliana] dbj|BAD43995 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene148088 SustainPine v3.0 499
AutoFact: Probable pre-mRNA-splicing factor ATP-dependent RNA helicase n=2 Tax=Arabidopsis thaliana RepID=DHX8_ARATH 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent RNA helicase, putative 4.396e-10
Internal
sp_v3.0_unigene149466 SustainPine v3.0 183
AutoFact: Polyribonucleotide nucleotidyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SFA0_RICCO 2.0e-23
FL-Next: tr=Polyribonucleotide nucleotidyltransferase, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene149646 SustainPine v3.0 416
AutoFact: Suppressor of ty, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9SEX9_RICCO 5.0e-32
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Global transcription factor group 1.186e-07
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain