Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA-binding S4 domain

Term: IPR002942  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene158877 SustainPine v3.0 268
AutoFact: 40S ribosomal protein S4 n=2 Tax=Tetrahymena thermophila RepID=RS4_TETTH 5.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S4 3.336e-24
N-terminus
sp_v3.0_unigene159018 SustainPine v3.0 302
AutoFact: 40S ribosomal protein S4 putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WD75_9STRA 8.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S4 6.787e-17
Internal
sp_v3.0_unigene159140 SustainPine v3.0 373
AutoFact: 40S ribosomal protein S9-1 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NCA2_PHYIT 3.9937e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S9 4.623e-37
Internal
sp_v3.0_unigene160264 SustainPine v3.0 375
AutoFact: tyrS tyrosyl-tRNA synthetase [Arabidopsis thaliana] gb|AAF32473.1| putative tyrosyl-tRNA synthetase [Arabidopsis thaliana] dbj|BAD95182.1| putative tyrosyl-tRNA synthetase [Arabidopsis thaliana] gb|ABK32110.1| At3g02660 [Arabidopsis thaliana] gb|AEE73845. 1.0e-11
FL-Next: tr=Uncharacterized protein; Zea mays (Maize). 0.0
C-terminus
sp_v3.0_unigene161681 SustainPine v3.0 454
AutoFact: 40S ribosomal protein S9-1 n=1 Tax=Arabidopsis thaliana RepID=B3H7J6_ARATH 2.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S9 5.025e-33
Putative C-terminus
sp_v3.0_unigene162327 SustainPine v3.0 280
AutoFact: suppressor of variegation1 causing pseudouridine synthase-like protein [Arabidopsis thaliana] gb|AAM66944.1| unknown [Arabidopsis thaliana] dbj|BAC42334.1| unknown protein [Arabidopsis thaliana] gb|AEC09639.1| suppressor of variegation1 causing pseudourid 5.0e-11
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene164476 SustainPine v3.0 219
AutoFact: ribosomal protein S4e [Lygus lineolaris] 2.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S4 1.315e-20
N-terminus
sp_v3.0_unigene173892 SustainPine v3.0 240
Sma3: 40S ribosomal protein S9 1.819e-07
coding
sp_v3.0_unigene183376 SustainPine v3.0 676
AutoFact: 40S ribosomal protein S4 putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WD75_9STRA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S4 2.043e-20
C-terminus
sp_v3.0_unigene185965 SustainPine v3.0 520
AutoFact: Putative ribosomal protein S4 (Fragment) n=1 Tax=Barentsia elongata RepID=A8UAC7_9BILA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S4 4.563e-24
C-terminus
sp_v3.0_unigene186309 SustainPine v3.0 627
AutoFact: 40S ribosomal protein S4 n=2 Tax=Ixodoidea RepID=RS4_IXOSC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S4 4.563e-24
C-terminus
sp_v3.0_unigene186624 SustainPine v3.0 461
AutoFact: 40S ribosomal protein S4 n=2 Tax=Ixodoidea RepID=RS4_IXOSC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S4 4.456e-24
Internal
sp_v3.0_unigene186631 SustainPine v3.0 476
AutoFact: 40S ribosomal protein S4 n=2 Tax=Ixodoidea RepID=RS4_IXOSC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S4 2.176e-20
C-terminus
sp_v3.0_unigene188724 SustainPine v3.0 530
AutoFact: Putative 40S ribosomal protein S9 n=1 Tax=Crithidia sp. ATCC 30255 RepID=C6K3P0_9TRYP 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S9 2.52234e-44
C-terminus
sp_v3.0_unigene188835 SustainPine v3.0 562
AutoFact: 40S ribosomal protein S9-1 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NCA2_PHYIT 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S9 2.38221e-44
C-terminus
sp_v3.0_unigene189509 SustainPine v3.0 514
AutoFact: Putative ribosomal protein S4 (Fragment) n=1 Tax=Barentsia elongata RepID=A8UAC7_9BILA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S4 4.563e-24
Putative C-terminus
sp_v3.0_unigene189554 SustainPine v3.0 585
AutoFact: F8L10.3 protein n=2 Tax=Arabidopsis thaliana RepID=Q9LNN6_ARATH 8.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene189843 SustainPine v3.0 685
AutoFact: 40S ribosomal protein S4 n=4 Tax=Obtectomera RepID=RS4_BOMMO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S4 4.456e-24
C-terminus
sp_v3.0_unigene190647 SustainPine v3.0 481
AutoFact: 40S ribosomal protein S91 putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WMR6_9STRA 8.40779e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S9 9.80909e-45
C-terminus
sp_v3.0_unigene193208 SustainPine v3.0 413
AutoFact: PREDICTED: 40S ribosomal protein S4-like isoform 1 [Apis mellifera] 9.94922e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S4 3.504e-24
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain