Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA-binding S4 domain

Term: IPR002942  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene152390 SustainPine v3.0 461
• AutoFact: 40S ribosomal protein S4 n=2 Tax=Ixodoidea RepID=RS4_IXOSC 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 4.563e-24
C-terminus
sp_v3.0_unigene152481 SustainPine v3.0 485
• AutoFact: Ribosomal protein S9, component of cytosolic 80S ribosome and 40S small subunit n=3 Tax=Chlamydomonadales RepID=A8JGF8_CHLRE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 1.035e-36
N-terminus
sp_v3.0_unigene152573 SustainPine v3.0 516
• AutoFact: ribosomal protein S9 [Lysiphlebus testaceipes] gb|AAX62466.1| ribosomal protein S9 variant 1 [Lysiphlebus testaceipes] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 3.78351e-44
N-terminus
sp_v3.0_unigene152857 SustainPine v3.0 257
• AutoFact: Ribosomal protein S4 (Fragment) n=1 Tax=Myxine glutinosa RepID=Q86LW7_MYXGL 7.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 7.321e-17
Internal
sp_v3.0_unigene153248 SustainPine v3.0 347
• AutoFact: 40S ribosomal protein S9-1 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NCA2_PHYIT 1.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 9.80909e-45
C-terminus
sp_v3.0_unigene153380 SustainPine v3.0 609
• AutoFact: S9 n=1 Tax=Suberites domuncula RepID=Q4KTD3_SUBDO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 2.8026e-44
Putative Complete
sp_v3.0_unigene153703 SustainPine v3.0 527
• AutoFact: [J] COG0522 Ribosomal protein S4 and related proteins 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 1.54143e-44
Putative C-terminus
sp_v3.0_unigene154097 SustainPine v3.0 200
• AutoFact: 40S ribosomal protein S4 n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9BY76_9EUKA 4.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene154274 SustainPine v3.0 274
• AutoFact: Putative ribosomal protein S4 (Fragment) n=1 Tax=Barentsia elongata RepID=A8UAC7_9BILA 3.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 5.305e-11
C-terminus
sp_v3.0_unigene154335 SustainPine v3.0 295
• AutoFact: U3 small nucleolar ribonucleoprotein protein IMP3 p n=1 Tax=Albugo laibachii Nc14 RepID=F0W7J4_9STRA 8.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein-like 1.666e-06
C-terminus
sp_v3.0_unigene154371 SustainPine v3.0 439
• AutoFact: Singapore isolate B (sub-type 7) whole genome shotgun sequence assembly, scaffold_15 n=1 Tax=Blastocystis hominis RepID=D8M187_BLAHO 2.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 1.796e-20
C-terminus
sp_v3.0_unigene154545 SustainPine v3.0 118
• AutoFact: 40S ribosomal protein S4 n=12 Tax=rosids RepID=RS4_GOSHI 1.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 4.755e-17
N-terminus
sp_v3.0_unigene154752 SustainPine v3.0 472
• AutoFact: PREDICTED: 40S ribosomal protein S4-like n=1 Tax=Acyrthosiphon pisum RepID=UPI0001791CA4 4.00001e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 1.092e-20
Internal
sp_v3.0_unigene155084 SustainPine v3.0 226
• AutoFact: 40S ribosomal protein S4, putative n=1 Tax=Pediculus humanus corporis RepID=E0W344_PEDHC 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 1.646e-20
Internal
sp_v3.0_unigene155093 SustainPine v3.0 237
• AutoFact: 40S ribosomal protein S4 n=1 Tax=Dictyostelium discoideum RepID=RS4_DICDI 2.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 3.336e-24
N-terminus
sp_v3.0_unigene155292 SustainPine v3.0 504
• AutoFact: Ribosomal protein S9 n=1 Tax=Pfiesteria piscicida RepID=E8Z6E9_PFIPI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 2.94273e-44
N-terminus
sp_v3.0_unigene155334 SustainPine v3.0 252
• AutoFact: Ribosomal protein S9 n=2 Tax=Protostomia RepID=A9LMJ6_HALDI 3.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 6.735e-26
Putative N-terminus
sp_v3.0_unigene155364 SustainPine v3.0 337
• AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 5.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 1.49196e-41
C-terminus
sp_v3.0_unigene155463 SustainPine v3.0 376
• AutoFact: 40S ribosomal protein S9 n=2 Tax=Dictyostelium RepID=RS9_DICDI 3.00018e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 2.102e-29
N-terminus
sp_v3.0_unigene155491 SustainPine v3.0 464
• AutoFact: 40S ribosomal protein S4 [Bombyx mori] sp|Q5UAP0.1|RS4_BOMMO RecName: Full=40S ribosomal protein S4 gb|AAV34860.1| ribosomal protein S4 [Bombyx mori] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 3.504e-24
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain